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Series GSE190661 Query DataSets for GSE190661
Status Public on Aug 05, 2023
Title Methylation studies in baboons.
Platform organisms Homo sapiens; Mus musculus; Rattus norvegicus
Sample organism Papio hamadryas
Experiment type Methylation profiling by array
Summary DNA methylation data from Papio hamadryas (baboons) profiled on the mammalian methylation array (HorvathMammalMethylChip40) which focuses on highly conserved CpGs across mammalian species.
Seven tissue types (fetal cerebral cortex, adult cerebral cortex, cerebellum, adipose, heart, liver, and skeletal muscle) with ages ranging from late fetal life to 22.8 years of age.
 
Overall design n=325 samples/arrays. Genome annotations of the array can be downloaded from https://github.com/shorvath/MammalianMethylationConsortium
 
Contributor(s) Horvath S, Nathanielsz PW
Citation(s) 37493860, 37563227, 38848365
Submission date Dec 10, 2021
Last update date Jun 26, 2024
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platforms (1)
GPL28271 Illumina HorvathMammalianMethylChip40 BeadChip
Samples (325)
GSM5727613 Sample1.Olive baboon.202794570016_R01C01
GSM5727614 Sample2.Olive baboon.202794570016_R02C01
GSM5727615 Sample3.Olive baboon.202794570016_R03C01
Relations
BioProject PRJNA787931

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190661_Explanation_of_characteristic_variables.docx.gz 12.5 Kb (ftp)(http) DOCX
GSE190661_RAW.tar 243.3 Mb (http)(custom) TAR (of IDAT)
GSE190661_README.docx 12.9 Kb (ftp)(http) DOCX
GSE190661_datBetaNormalized.csv.gz 94.6 Mb (ftp)(http) CSV
Processed data are available on Series record

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