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Series GSE190644 Query DataSets for GSE190644
Status Public on Dec 12, 2021
Title Camellia oleifera seed transcriptomics
Organism Camellia oleifera
Experiment type Expression profiling by high throughput sequencing
Summary We report the expression analysis of seed kernel in Camellia oleifera cultivars. In total 221 cultivars are sequenced by the Illumina sequencing experiments to obtain the gene expression profiles.
 
Overall design Transcriptomics association analysis in BioProject accession PRJNA732216: EXPERIMENT from SRX11246770 to SRX11246990, RUN from SRR14934120 to SRR14934340 .
Web link https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02599-2
 
Contributor(s) Hengfu Y, Ping L, Xiaohua Y
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BioProject PRJNA732216
Submission date Dec 10, 2021
Last update date Mar 13, 2022
Contact name Hengfu Yin
E-mail(s) hfyin@sibs.ac.cn
Organization name Research Institute of Subtropical Forestry, Chinese Academy of Forestry
Street address Daqiao 73
City Hangzhou
State/province Zhejiang
ZIP/Postal code 311400
Country China
 
Platforms (1)
GPL31060 Illumina HiSeq 4000 (Camellia oleifera)
Samples (221)
GSM5727010 assoL186
GSM5727011 assoL212
GSM5727012 assoL213

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190644_All_transcripts_TWAS.fasta.gz 16.8 Mb (ftp)(http) FASTA
GSE190644_GEO_FPKM_matrix_for_CON_population.xlsx 15.2 Mb (ftp)(http) XLSX
GSE190644_RAW.tar 21.1 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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