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Series GSE189921 Query DataSets for GSE189921
Status Public on May 04, 2022
Title Small extracellular vesicles induce resistance to anti-GD2 immunotherapy unveiling tipifarnib as an adjunct to neuroblastoma immunotherapy
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We utilize the syngeneic 9464D-GD2 mouse model to investigate the role of neuroblastoma-derived small extracellular vesicles (sEVs) in developing resistance to the anti-GD2 monoclonal antibody dinutuximab. RNA-sequencing and flow cytometry analysis of whole tumors revealed that neuroblastoma-derived sEVs modulate immune cell tumor infiltration upon dinutuximab treatment to create an immunosuppressive tumor microenvironment that contains more tumor-associated macrophages (TAMs) and fewer tumor-infiltrating NK cells. Importantly, tipifarnib, a farnesyltransferase inhibitor that inhibits sEV secretion, drastically enhanced the efficacy of dinutuximab and reversed the immunosuppressive effects of neuroblastoma-derived sEVs.
 
Overall design We performed RNA-seq after isolated subcutaneous tumors from female mice receiving 5 treatments of dinutuximab or dinutuximab plus sEVs derived from 9464D-GD2 cells. Each treatment group contains two biological replicates.
 
Contributor(s) Liu X, Wang H
Citation(s) 35483745
Submission date Nov 30, 2021
Last update date May 05, 2022
Contact name Hong-Gang Wang
E-mail(s) hwang3@pennstatehealth.psu.edu
Organization name Penn State College of Medicine
Department Pediatrics
Lab Hong-Gang Wang
Street address 500 University Drive, H085, Rm C7833B
City Hershey
State/province PA
ZIP/Postal code 17033
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM5709948 Tumor, Dinu3
GSM5709949 Tumor, Dinu4
GSM5709950 Tumor, EV3
Relations
BioProject PRJNA785155
SRA SRP348998

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE189921_CountMatrix.txt.gz 263.3 Kb (ftp)(http) TXT
GSE189921_RAW.tar 640.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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