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| Status |
Public on Jul 21, 2022 |
| Title |
Common chromosome gains and losses in acute lymphoblastic leukemia [RNA-seq] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To evaluate chromosomal aberrations that were first detected with aCGH at the transcriptome level, we obtained total RNA from a sample derived from an individual with untreated acute lymphoblastic leukemia (which we named M5) and from the JURKAT and CEM cell lines. Sequencing was performed by NOVOGEN Bioinformatics Technology Co., Ltd., in Beijing, China. The platform used was Illumina NovaSeq 6000.
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| Overall design |
We evaluate altered chromosomal regions with loss in chromosomes 2,9 and 14 and with amplification in chromosomes 13 and 17
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| Contributor(s) |
Aguilar-Lemarroy A, Zapata-García JA, Jave-Suárez LF, Riveros-Magaña A |
| Citation(s) |
36428851 |
| |
| Submission date |
Nov 26, 2021 |
| Last update date |
Nov 28, 2022 |
| Contact name |
Adriana Del Carmen Aguilar Lemarroy |
| E-mail(s) |
adry_al@outlook.com
|
| Phone |
+52 3315207625
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| Organization name |
Centro de Investigación Biomédica de Occidente
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| Department |
División de Inmunología
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| Lab |
Inmunología
|
| Street address |
Sierra Mojada 800, Independencia Oriente, 44340 Guadalajara, Jal.
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| City |
Guadalajara |
| State/province |
Jalisco |
| ZIP/Postal code |
44340 |
| Country |
Mexico |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA783937 |
| SRA |
SRP348104 |
