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Series GSE188481 Query DataSets for GSE188481
Status Public on May 02, 2022
Title Comprehensive testing of chemotherapy and immune checkpoint blockade in preclinical cancer models identifies additive combinations
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Background: Antibodies that target immune checkpoints such as cytotoxic T lymphocyte antigen 4 (CTLA 4) and the programmed cell death protein 1/ligand 1 (PD-1/PD-L1) are now a treatment option for multiple cancer types. However, as a monotherapy, objective responses only occur in a minority of patients. Chemotherapy is widely used in combination with immune checkpoint blockade (ICB). Although a variety of isolated immunostimulatory effects have been reported for several classes of chemotherapeutics, it is unclear which chemotherapeutics provide the most benefit when combined with ICB.
Methods: We investigated 10 chemotherapies from the main canonical classes dosed at the clinically relevant maximum tolerated dose in combination with anti CTLA-4/anti-PD-L1 ICB. We screened these chemo-immunotherapy combinations in two murine mesothelioma models from two different genetic backgrounds, and identified chemotherapies that produced additive, neutral or antagonistic effects when combined with ICB. Using flow cytometry and bulk RNAseq, we characterized the tumor immune milieu in additive chemo-immunotherapy combinations.
Results: 5-fluorouracil (5-FU) or cisplatin were additive when combined with ICB while vinorelbine and etoposide provided no additional benefit when combined with ICB. The combination of 5-FU with ICB augmented an inflammatory tumor microenvironment with markedly increased CD8+ T cell activation and upregulation of IFN𝛾, TNF𝛼 and IL-1β signaling. The effective anti tumor immune response of 5-FU chemo-immunotherapy was dependent on CD8+ T cells but was unaffected when TNF𝛼 or IL 1β cytokine signaling pathways were blocked.
Conclusions: Our study identified additive and non-additive chemotherapy/ICB combinations and suggests a possible role for increased inflammation in the tumor microenvironment as a basis for effective combination therapy.
 
Overall design 28 AB1HA tumor samples in total: 4 samples treated with PBS, 5 samples treated ICB (anti-CTLA-4/anti-PD-L1), 5 samples treated with 5-FU, 5 samples treated with Cisplatin, 5 samples treated with 5-FU+ICB, 5 samples treated with Cisplatin+ICB. Each sample represents an individual biological replicate (i.e. no duplicate samples from the same mouse). Tumors for all mice were collected 7 days after the administration of MTD Chemo and/or ICB
 
Contributor(s) Principe N
Citation(s) 35634282
Submission date Nov 09, 2021
Last update date Jun 30, 2022
Contact name Nicola Principe
E-mail(s) nicola.principe@research.uwa.edu.au
Organization name University of Western Australia
Street address 6 Verdun St
City Nedlands
State/province WA
ZIP/Postal code 6009
Country Australia
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (28)
GSM5683615 PBS tumor 1 [NP11]
GSM5683616 PBS tumor 2 [NP12]
GSM5683617 PBS tumor 3 [NP13]
Relations
BioProject PRJNA779045
SRA SRP345271

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE188481_raw_counts_5FU.txt.gz 2.0 Mb (ftp)(http) TXT
GSE188481_raw_counts_Cisplatin.txt.gz 1.9 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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