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| Status |
Public on Nov 05, 2021 |
| Title |
Leaf transcriptome profiling of contrasting sugarcane genotypes for drought tolerance under field conditions |
| Organism |
Saccharum officinarum |
| Experiment type |
Expression profiling by array
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| Summary |
Transcriptional profiling of sugarcane leaf (+1) was collected from drought-prone areas at 42 and 117 days after the last rainfall when plants were 6- and 9-month-old, respectively. Sample hybridization (non-irrigated treatment against irrigated control) was performed to monitor gene expression in a two-color Agilent custom microarray. Our goal was to investigate the effect of mild and severe water stress on the transcriptomes of drought-sensitive (IACSP97-7065) and -tolerant (IACSP94-2094) sugarcane genotypes.
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| Overall design |
Two-condition experiment: irrigated (control) vs. non-irrigated at 42nd day after the last rainfall (mild water stress), irrigated (control) vs non-irrigated at 117th day after the last rainfall (severe water stress).
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| Contributor(s) |
Contiliani DF, Nebó Carlos de Oliveira JF, Andrade LM, Peixoto Júnior RF, Machado R, Nunes D, Ribeiro RV, Belloti M, Pereira TC, de Matos Pires RC, Rezende P, Souza G, Landell M, de Oliveira Figueira AV, Creste S |
| Citation(s) |
35650424 |
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| Submission date |
Nov 03, 2021 |
| Last update date |
Jun 21, 2022 |
| Contact name |
Danyel Contiliani |
| E-mail(s) |
danyel.contiliani@usp.br
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| Organization name |
University of Sao Paulo
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| Street address |
Av. Bandeirantes, 3900
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| City |
Ribeirão Preto |
| ZIP/Postal code |
14040-901 |
| Country |
Brazil |
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| Platforms (1) |
| GPL22278 |
SUCEST-FUN Sugarcane 44k v1.0 (probe name version) |
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| Samples (10)
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| GSM5668270 |
Drought 7 months (irrigated as control) - Leaf +1 - Variety IACSP 94-2094 (tolerant) |
| GSM5668271 |
Drought 7 months (irrigated as control) - Leaf +1 - Variety IACSP 94-2094 (tolerant) - biological replicate |
| GSM5668272 |
Drought 10 months (irrigated as control) - Leaf +1 - Variety IACSP 94-2094 (tolerant) |
| GSM5668273 |
Drought 10 months (irrigated as control) - Leaf +1 - Variety IACSP 94-2094 (tolerant) - biological replicate |
| GSM5668274 |
Drought 7 months (irrigated as control) - Leaf +1 - Variety IACSP 97-7065 (susceptible) |
| GSM5668275 |
Drought 7 months (irrigated as control) - Leaf +1 - Variety IACSP 97-7065 (susceptible)_N |
| GSM5668276 |
Drought 7 months (irrigated as control) - Leaf +1 - Variety IACSP 97-7065 (susceptible) - biological replicate |
| GSM5668277 |
Drought 7 months (irrigated as control) - Leaf +1 - Variety IACSP 97-7065 (susceptible) - biological replicate2 |
| GSM5668278 |
Drought 10 months (irrigated as control) - Leaf +1 - Variety IACSP 97-7065 (susceptible) |
| GSM5668279 |
Drought 10 months (irrigated as control) - Leaf +1 - Variety IACSP 97-7065 (susceptible) - biological replicate |
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| Relations |
| BioProject |
PRJNA777548 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE187416_RAW.tar |
127.9 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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