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| Status |
Public on Oct 28, 2021 |
| Title |
A transcriptome study of a non-shedding fruit Elaeis oleifera palm |
| Organism |
Elaeis oleifera |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
A comparative transcriptome analysis was performed to compare the fruit AZs of the non-shedding E. oleifera variant and from an individual of the same progeny that sheds its ripe fruit normally. The study provides evidence for widespread perturbation to gene expression in the AZ of the non-shedding variant, compared to the normal fruit-shedding control, and allows insight into abscission related functions.
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| |
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| Overall design |
We used an RNA-Seq approach to determine globally the expression of genes affected in the variant compared with that of an E. oleifera individual that normally sheds its fruit.
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| |
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| Contributor(s) |
Tranbarger TJ, Morcillo F |
| Citation(s) |
34828330 |
| |
| Submission date |
Oct 18, 2021 |
| Last update date |
Dec 07, 2021 |
| Contact name |
Timothy John TRANBARGER |
| E-mail(s) |
timothy.tranbarger@ird.fr
|
| Phone |
0467416472
|
| Organization name |
Institut de Recherche pour le Développement
|
| Department |
Ecology, Biodiversity and Functioning of Continental Ecosystems (ECOBIO)
|
| Lab |
DIADE, IRD Centre de Montpellier
|
| Street address |
911 avenue agropolis BP 64501
|
| City |
Montpellier |
| ZIP/Postal code |
34394 |
| Country |
France |
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| Platforms (1) |
| GPL30890 |
Illumina NovaSeq 6000 (Elaeis oleifera) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA773955 |
| SRA |
SRP342860 |
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