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Series GSE185201 Query DataSets for GSE185201
Status Public on May 24, 2022
Title ChIP-seq of HBECs at ALI with and without stimulation of IFN-a, IL-17, and IL-13
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We used ChIP-seq to investigate epigenomic modifications in response to IFN-a, IL-17, and IL-13 in primary human bronchial epithelial cells (HBECs).
 
Overall design Human HBE cells were treated with IL13, IL17 IFN alpha, IL13 + IFN alpha, or a no treatment control in order to identify asthma-associated cytokine responsive enhancers and promoters through H3K27ac ChIP-seq.
 
Contributor(s)  Koh KD, Bonser LR, Eckalbar wL, Erle DJ
Citation(s) 36777184
Submission date Oct 03, 2021
Last update date Feb 24, 2023
Contact name Walter Eckalbar
E-mail(s) walter.eckalbar@gmail.com
Organization name University of California, San Francisco
Street address 513 Parnassus Ave MSB-813
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (27)
GSM5607999 IL13 Treatment HBE Donor 1605 Input [D24_13_Input_T]
GSM5608000 IL13 Treatment HBE Donor 1243 H3K27ac ChIP [D24_13_K27ac_repHBE1243]
GSM5608001 IL13 Treatment HBE Donor 1326 H3K27ac ChIP [D24_13_K27ac_repHBE1326]
This SubSeries is part of SuperSeries:
GSE185202 scRNA-seq, bulk RNA-seq and ChIP-seq of HBECs at ALI with and without stimulation of IFN-a, IL-17, and IL-13
Relations
BioProject PRJNA768257
SRA SRP339810

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE185201_RAW.tar 3.5 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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