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Series GSE185135 Query DataSets for GSE185135
Status Public on Jul 26, 2024
Title Self-Renewing Presomitic Mesoderm Progenitor Lines Reprogrammed from human urine cells [induced cell type bulk RNA-seq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Vertebrae formation is the defining feature of all vertebrates1,2. Yet, each vertebrate species appears to have a unique timing mechanism for forming somites along the vertebral column3-5. Human vertebrate formation remains poorly studied due to technical and ethical limitations. Here we report the generation of self-renewing stem cells with characteristic presomitic mesoderm (PSM) features by reprogramming epithelial cells isolated from human urine. These induced expandable presomitic mesoderm progenitor cells (UiPSM) proliferated extensively for more than 30 passages in chemically defined conditions, robustly producing 1040 UiPSM cells. UiPSM established presomitic mesodermal transcription profile, not detected pluripotency, ectoderm and endoderm related genes. UiPSM developed into presomitic mesodermal lineage cells, such as skeletal muscle cells(skm), osteoblast and chrondroblast cells in vivo and vitro, when transplanted UiPSM derived human skm cells in muscle injury model, the skm cells can survive in vivo and contribute to muscle regeneration up to one month. Thus, UiPSM is a powerful system to study human somite development and provide strategies for regenerative medicine in musculoskeletal system
 
Overall design Building library and sequencing process of producing Skeletal Muscle cell (SKM) Day30, Day60, Osteoblast, Chondroblast, Overexpression MYOD Skeletal Muscle cell (SKM) Day15, Day30
 
Contributor(s) Huang X
Citation(s) 39010176
Submission date Sep 30, 2021
Last update date Aug 09, 2024
Contact name Xingnan Huang
E-mail(s) huangxingnan1994@gmail.com
Organization name Westlake University
Street address No.18 Shilongshan Road
City Hangzhou
ZIP/Postal code 310024
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (6)
GSM5606896 Chondroblast
GSM5606897 Osteoblast
GSM5606898 SKM_D30
This SubSeries is part of SuperSeries:
GSE185137 Self-Renewing Presomitic Mesoderm Progenitor Lines Reprogrammed from human urine cells
Relations
BioProject PRJNA767708
SRA SRP339586

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE185135_RAW.tar 6.0 Mb (http)(custom) TAR (of TXT)
GSE185135_rsem_results.all.expected_count.csv.gz 461.7 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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