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| Status |
Public on Dec 20, 2021 |
| Title |
Spt6-tSH2 domain and Rpb1 |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
34967414 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R01 GM064649 |
Biochemical, Genetic, and Genomic Analysis of Nucleosome Reorganization by FACT |
UNIVERSITY OF UTAH |
Timothy G Formosa |
| R01 GM116560 |
Structure, mechanism, and function of the histone chaperones Spt6 and FACT |
UNIVERSITY OF UTAH |
Timothy G Formosa |
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| Submission date |
Sep 28, 2021 |
| Last update date |
Feb 02, 2022 |
| Contact name |
Tim Formosa |
| E-mail(s) |
TIM@biochem.utah.edu
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| Phone |
8015815435
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| Organization name |
University of Utah School of Medicine
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| Department |
Biochemistry
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| Street address |
15 N Medical Dr East RM 4100
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| City |
Salt Lake City |
| State/province |
UT |
| ZIP/Postal code |
84112-5650 |
| Country |
USA |
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| Platforms (2) |
| GPL17342 |
Illumina HiSeq 2500 (Saccharomyces cerevisiae) |
| GPL27812 |
Illumina NovaSeq 6000 (Saccharomyces cerevisiae) |
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| Samples (48)
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| GSM5311315 |
spt6-R1 |
| GSM5311316 |
spt6-R2 |
| GSM5311317 |
spt6-R3 |
| GSM5311318 |
spt6-KK1 |
| GSM5311319 |
spt6-KK2 |
| GSM5311320 |
spt6-KK3 |
| GSM5311321 |
spt6-R,KK1 |
| GSM5311322 |
spt6-R,KK2 |
| GSM5311323 |
spt6-R,KK3 |
| GSM5311324 |
rpb1-TPY1 |
| GSM5311325 |
rpb1-TPY2 |
| GSM5311326 |
rpb1-TPY3 |
| GSM5311327 |
rpb1-FSP1 |
| GSM5311328 |
rpb1-FSP2 |
| GSM5311329 |
rpb1-FSP3 |
| GSM5311330 |
rpb1-TPY,FSP1 |
| GSM5311331 |
rpb1-TPY,FSP2 |
| GSM5311332 |
rpb1-TPY,FSP3 |
| GSM5602404 |
Mnase-Seq WT1 |
| GSM5602405 |
Mnase-Seq spt6-R-H1 |
| GSM5602406 |
Mnase-Seq spt6-KK-AA1 |
| GSM5602407 |
Mnase-Seq spt6-R-H, KK-AA1 |
| GSM5602408 |
Mnase-Seq rpb1-TPY-AAA1 |
| GSM5602409 |
Mnase-Seq rpb1-FSP+-KRR+1 |
| GSM5602410 |
Mnase-Seq rpb1-TPY-AAA,FSP+-KRR+1 |
| GSM5602411 |
Mnase-Seq WT2 |
| GSM5602412 |
Mnase-Seq spt6-R-H2 |
| GSM5602413 |
Mnase-Seq spt6-KK-AA2 |
| GSM5602414 |
Mnase-Seq spt6-R-H, KK-AA2 |
| GSM5602415 |
Mnase-Seq rpb1-TPY-AAA2 |
| GSM5602416 |
Mnase-Seq rpb1-FSP+-KRR+2 |
| GSM5602417 |
Mnase-Seq rpb1-TPY-AAA,FSP+-KRR+2 |
| GSM5602418 |
Mnase-Seq WT3 |
| GSM5602419 |
Mnase-Seq spt6-R-H3 |
| GSM5602420 |
Mnase-Seq spt6-KK-AA3 |
| GSM5602421 |
Mnase-Seq spt6-R-H, KK-AA3 |
| GSM5602422 |
Mnase-Seq rpb1-TPY-AAA3 |
| GSM5602423 |
Mnase-Seq rpb1-FSP+-KRR+3 |
| GSM5602424 |
Mnase-Seq rpb1-TPY-AAA,FSP+-KRR+3 |
| GSM5708377 |
WT1, MNase-seq |
| GSM5708378 |
WT2, MNase-seq |
| GSM5708379 |
WT3, MNase-seq |
| GSM5708380 |
rpb1-T,FSP1, MNase-seq |
| GSM5708381 |
rpb1-T,FSP2, MNase-seq |
| GSM5708382 |
rpb1-T,FSP3, MNase-seq |
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| This SuperSeries is composed of the following SubSeries: |
| GSE174427 |
The Spt6-tSH2 domain coordinates functional transitions of the RNA Polymerase II CTD during initiation and elongation. |
| GSE184954 |
The interaction between the Spt6-tSH2 domain and Rpb1 affects multiple functions of RNA Polymerase II |
| GSE189831 |
The interaction between the Spt6-tSH2 domain and Rpb1 affects multiple functions of RNA Polymerase II [MNase-seq] |
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| Relations |
| BioProject |
PRJNA767090 |
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