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Series GSE184413 Query DataSets for GSE184413
Status Public on Mar 31, 2022
Title Mechanotherapy promotes extracellular matrix remodeling in aged rat muscle recovering from disuse by reprogramming intercellular communication
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary A mechanistic understanding of the age-related impairment to skeletal muscle regrowth following disuse atrophy as well as therapies to augment recovery in the aged are currently lacking. Mechanotherapy in the form of cyclic compressive loading has been shown to benefit skeletal muscle under a variety of paradigms, but not during the recovery from disuse in aged muscle. To determine whether mechanotherapy promotes extracellular matrix (ECM) remodeling, a critical aspect of muscle recovery after atrophy, we performed single cell RNA sequencing (scRNA-seq) of gastrocnemius muscle cell populations, stable isotope tracing of intramuscular collagen, and histology of the ECM in adult and aged rats recovering from disuse, with and without mechanotherapy. ECM remodeling-related gene expression in fibro-adipose progenitor cells (FAPs) was absent in aged compared to adult muscle following 7 days of recovery, and instead were enriched in chemoattractant genes. There was a significantly lower expression of genes related to phagocytic activity in aged macrophages during recovery, despite enriched chemokine gene expression of numerous stromal cell populations, including FAPs and endothelial cells. Mechanotherapy reprogrammed the transcriptomes of both FAPs and macrophages in aged muscle recovering from disuse to restore ECM-and phagocytosis-related gene expression, respectively. Stable isotope labeling of intramuscular collagen and histological evaluation confirmed mechanotherapy-mediated remodeling of the ECM in aged muscle recovering from disuse. In summary, our results highlight mechanisms underlying age-related impairments during the recovery from disuse atrophy and promote mechanotherapy as an intervention that reprograms the muscle transcriptional environment more similar to that of adult skeletal muscle.
 
Overall design Examination of how extracellular matrix related gene expression in skeletal muscle mononuclear cells changes with age during the recovery from disuse atrophy, and in response to a mechanotherapy
 
Contributor(s) Hettnger ZR, Dupont-Versteegden EE
Citation(s) 35434632, 36895061
Submission date Sep 19, 2021
Last update date Jun 23, 2023
Contact name Yuan Wen
E-mail(s) ywen2@g.uky.edu
Phone 8592186846
Organization name University of Kentucky
Street address 760 Press Ave
City Lexington
State/province Kentucky
ZIP/Postal code 40536
Country USA
 
Platforms (1)
GPL20084 Illumina NextSeq 500 (Rattus norvegicus)
Samples (6)
GSM5588467 Adult WB
GSM5588468 Adult RE
GSM5588469 Adult RE + M
Relations
BioProject PRJNA764541
SRA SRP337808

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Supplementary file Size Download File type/resource
GSE184413_RAW.tar 138.4 Mb (http)(custom) TAR (of H5)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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