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Series GSE183994 Query DataSets for GSE183994
Status Public on May 06, 2023
Title Polycomb protein SCML2 mediates paternal epigenetic inheritance through sperm chromatin
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary Sperm chromatin retains small amounts of histones, and the chromatin states of sperm mirror gene expression programs of the next generation. It remains largely unknown how paternal epigenetic information is transmitted through sperm chromatin. Here we developed a novel mouse model of paternal epigenetic inheritance in which deposition of Polycomb repressive complex 2 (PRC2) mediated-repressive H3K27me3 is attenuated in the paternal germline. By applying modified methods of assisted reproductive technology, we rescued infertility of mice absent of Polycomb protein SCML2, which is the regulator of germline gene expression through the establishment of H3K27me3 on bivalent promoters with other active marks H3K4me2/3. In F1 males of Scml2-knockout mice, which has wild-type genotype, gene expression is dysregulated in the male germline during spermiogenesis. These dysregulated genes are targets of SCML2-mediated H3K27me3 in mature sperm. Thus, SCML2 mediates intergenerational inheritance of paternal epigenetic information through the regulation of sperm chromatin.
 
Overall design RNA-seq analysis of livers and spermatozoa from Ctrl-F1, Scml2-KO-F1 and Scml2-KO-F2 male mice.

Native ChIP-seq analysis for H3K27me3 and H3K4me3 in testicular and cauda-epididymal sperm from Crtl and Scml2-KO male mice.
 
Contributor(s) Sakashita A, Namekawa SH
Citation(s) 37283086
Submission date Sep 12, 2021
Last update date Sep 12, 2023
Contact name Akihiko Sakashita
E-mail(s) asakashita@keio.jp
Organization name Keio University School of Medicine
Department Department of Molecular Biology,
Street address 35 Shinanomachi
City Shinjuku-ku
State/province Tokyo
ZIP/Postal code 160-8582
Country Japan
 
Platforms (3)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (47)
GSM5575512 Ctrl_ICSI-F1_liver_rep1
GSM5575513 Ctrl_ICSI-F1_liver_rep2
GSM5575514 Scml2-KO_ICSI-F1_liver_rep1
Relations
BioProject PRJNA762589
SRA SRP336758

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Supplementary file Size Download File type/resource
GSE183994_RAW.tar 4.6 Gb (http)(custom) TAR (of BW, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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