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| Status |
Public on Sep 04, 2021 |
| Title |
Symmetry breaking in gastruloid development |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We use single cell RNA sequencing to describe the transcriptional changes during gastruloid development from 24 to 84 hours with 12 hours intervals.
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| Overall design |
Examination of transcriptional profiles of gastruloids cultured in N2B27 at 24, 36, 48, 60, 72, and 84 hours post-seeding.
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| Contributor(s) |
Zinner M, Lukonin I, Suppinger S, Palla G, Ortiz R, Azzi C, Challet-Meylan L, Stadler MB, Vianello S, Theis FJ, Lutolf MP, Liberali P |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Sep 02, 2021 |
| Last update date |
Sep 04, 2021 |
| Contact name |
Marietta Zinner |
| E-mail(s) |
marietta.zinner@fmi.ch
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| Organization name |
Friedrich Miescher Institute for Biomedical Research
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| Street address |
Maulbeerstrasse 66
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| City |
4058 |
| ZIP/Postal code |
Basel |
| Country |
Switzerland |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (7)
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| Relations |
| BioProject |
PRJNA759809 |
| SRA |
SRP335362 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE183255_UMI_counts_spliced_normalized_log2.mtx.gz |
538.7 Mb |
(ftp)(http) |
MTX |
| GSE183255_UMI_counts_spliced_raw.mtx.gz |
448.1 Mb |
(ftp)(http) |
MTX |
| GSE183255_UMI_counts_unspliced_raw.mtx.gz |
215.6 Mb |
(ftp)(http) |
MTX |
| GSE183255_barcodes.tsv.gz |
214.0 Kb |
(ftp)(http) |
TSV |
| GSE183255_genes.tsv.gz |
435.3 Kb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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