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Series GSE183204 Query DataSets for GSE183204
Status Public on Jan 26, 2022
Title RNA molecular signature profiling in PBMCs of sporadic ALS patients: HSP70 overexpression is associated with nuclear SOD1
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary Amyotrophic Lateral Sclerosis (ALS) is a fatal neurodegenerative disease caused by loss of motor neurons. SOD1 may have a toxic role in the pathogenesis of ALS when the protein aggregates in the cytoplasm; increased accumulation of soluble nuclear SOD1 (nSOD1) represents a protective cellular reaction.
 
Overall design Peripheral Blood Mononuclear Cells derived from 18 sALS patients and 12 age- and sex-matched healthy controls (CTRL) were deep-sequenced and included in Real Time PCR experiments.
 
Contributor(s) Garofalo M, Pandini C, Bordoni M, Jacchetti E, Diamanti L, Carelli S, Raimondi MT, Sproviero D, Crippa V, Carra S, Poletti A, Pansarasa O, Gagliardi S, Cereda C
Citation https://doi.org/10.3390/cells11020293
Submission date Sep 01, 2021
Last update date Jan 27, 2022
Contact name Maria Garofalo
E-mail(s) maria.garofalo01@universitadipavia.it
Organization name IRCCS Mondino Foundation
Lab Genomic and Post Genomic Unit
Street address Via Mondino 2
City Pavia
ZIP/Postal code 27100
Country Italy
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (30)
GSM5553268 ALS sample 1
GSM5553269 ALS sample 2
GSM5553270 ALS sample 3
Relations
BioProject PRJNA759611
SRA SRP335222

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE183204_RAW.tar 57.9 Mb (http)(custom) TAR (of RESULTS)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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