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Series GSE183087 Query DataSets for GSE183087
Status Public on Aug 31, 2022
Title The thiolation modification of tRNA is essential for plant immunity
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Plants have evolved sophisticated mechanisms to regulate gene expression to activate immune responses against pathogen infections. However, how the translation system contributes to plant immunity is largely unknown. The evolutionarily conserved thiolation modification of tRNA ensures efficient decoding during translation. Here we show that tRNA thiolation is required for plant immunity in Arabidopsis. The Arabidopsis cgb mutant is hyper-susceptible to the pathogen Pseudomonas syringae. CGB encodes ROL5, a homolog of yeast NCS6 required for tRNA thiolation. ROL5 physically interacts with CTU2, a homolog of yeast NCS2. Mutations in either ROL5 or CTU2 result in loss of tRNA thiolation. Further analyses reveal that tRNA thiolation is required for both transcriptional reprogramming and translational reprogramming during immune responses. The translation efficiency of immune-related proteins reduces when tRNA thiolation is absent. Our study not only uncovers a new biological function of tRNA thiolation but also reveals a new mechanism for plant immunity.
 
Overall design We performed the mRNA profiles of 21-day old leaf tissues from tRNA modification mcm5s2U mutant (cgb) and the complementation line (COM) before or after the pathogen infection.
 
Contributor(s) Zheng X, Wu C, Yan S
Citation(s) 38284752
Submission date Aug 31, 2021
Last update date Feb 09, 2024
Contact name xueao zheng
E-mail(s) zhengxueao@webmail.hzau.edu.cn
Phone 18707110309
Organization name Huazhong agricultural university
Street address Shizishan
City Wuhan
State/province Not US or Canada
ZIP/Postal code 430070
Country China
 
Platforms (1)
GPL26208 Illumina NovaSeq 6000 (Arabidopsis thaliana)
Samples (12)
GSM5550814 cgb-0h-rep1
GSM5550815 cgb-0h-rep2
GSM5550816 cgb-0h-rep3
Relations
BioProject PRJNA759143
SRA SRP334895

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE183087_RNA_normalized_counts_total.CSV.gz 1.2 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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