|
| Status |
Public on Jul 05, 2022 |
| Title |
Next generation sequencing comparing RNA-seq data from Arabidopsis Col-0 wild type and splicing factor mutant prp8a-14 |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Purpose: Identify alternative splicing events and changes to transcript expression levels
|
| |
|
| Overall design |
RNA-seq of 8 day old continuous light grown whole seeding extract of Arabidopsis wild type Col-0 (3 biological replicates) as a control and prp8a-14 mututant (3 biological replicates). Six total samples analyzed
|
| |
|
| Contributor(s) |
Bartel B, Llinas R, Clark N |
| Citation(s) |
35608297 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R35 GM130338 |
Peroxisome biogenesis, dynamics, and degradation |
RICE UNIVERSITY |
Bonnie Bartel |
|
| |
| Submission date |
Aug 25, 2021 |
| Last update date |
Jul 05, 2022 |
| Contact name |
Bonnie Bartel |
| E-mail(s) |
bartel@rice.edu
|
| Organization name |
Rice University
|
| Department |
Biosciences
|
| Street address |
6100 Main St
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77005 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
|
| Samples (6)
|
| GSM5536885 |
Sample 1_mRNA Arabidopsis wild type Col-0 |
| GSM5536886 |
Sample 2_mRNA Arabidopsis wild type Col-0 |
| GSM5536887 |
Sample 3_mRNA Arabidopsis wild type Col-0 |
| GSM5536888 |
Sample 4_mRNA Arabidopsis prp8a-14 mutant |
| GSM5536889 |
Sample 5_mRNA Arabidopsis prp8a-14 mutant |
| GSM5536890 |
Sample 6_mRNA Arabidopsis prp8a-14 mutant |
|
| Relations |
| BioProject |
PRJNA757754 |
| SRA |
SRP334109 |
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