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| Status |
Public on Aug 02, 2022 |
| Title |
Transposon-activated POU5F1B promotes colorectal cancer growth and metastasis III |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The treatment of colorectal cancer (CRC) is an unmet medical need in absence of early diagnosis. Here, upon characterizing cancer-specific transposable element-driven transpochimeric gene transcripts (TcGTs) produced by this tumor, we found that expression of the hominid-restricted retrogene POU5F1B through aberrant activation of a primate-specific endogenous retroviral promoter is a strong negative prognostic CRC biomarker. Correlating this observation, we could demonstrate that POU5F1B fosters the proliferation and metastatic potential of CRC cells. We further determined that POU5F1B, in spite of its phylogenetic relationship with the POU5F1/OCT4 transcription factor, is a membrane-enriched protein that associates with protein kinases and known targets or interactors as well as with cytoskeleton-related molecules, and induces intracellular signaling events and the release of trans-acting factors involved in cell growth and cell adhesion. As POU5F1B is an apparently non-essential gene only lowly expressed in normal tissues, and as POU5F1B-containing TcGTs are detected in other tumors besides CRC, our data provide interesting leads for the development of cancer therapies.
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| |
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| Overall design |
RNA-sequencing analysis of LS1034 cells transduced with sh-scramble, POU5F1B-targeting shRNA3, or POU5F1B-targeting shRNA5.
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| Contributor(s) |
Simo-Riudalbas L, Planet E |
| Citation(s) |
35987910 |
| |
| Submission date |
Aug 19, 2021 |
| Last update date |
Aug 31, 2022 |
| Contact name |
Evarist Planet |
| E-mail(s) |
evarist.planet@epfl.ch
|
| Organization name |
EPFL
|
| Lab |
LVG
|
| Street address |
Route Cantonale
|
| City |
Lausanne |
| State/province |
Vaud |
| ZIP/Postal code |
1015 |
| Country |
Switzerland |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (9)
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| This SubSeries is part of SuperSeries: |
| GSE182467 |
Transposon-activated POU5F1B promotes colorectal cancer growth and metastasis |
|
| Relations |
| BioProject |
PRJNA756304 |
| SRA |
SRP333371 |
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