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Series GSE181840 Query DataSets for GSE181840
Status Public on Sep 14, 2021
Title ELK3 controls gastric cancer cell migration and invasion by regulating ECM remodeling-related genes
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Current therapeutic strategies, including surgery and chemotherapy, for gastric cancer improve survival; however, the survival rate for those with metastatic gastric cancer is very low. The molecular mechanisms underlying dissemination of gastric cancer cells to distant organs are unknown. Here, we show that the ELK3 gene is necessary for migration and invasion of gastric cancer cells. The ELK3 gene modulates expression of extracellular matrix (ECM) remodeling-related genes such as LOXL2, SERPINF1, COL16A1, NID1, and SNAI1 to facilitate cancer cell dissemination. Our in silico analysis indicated that ELK3 expression was positively correlated with these ECM remodeling-related genes in gastric cancer cells and human gastric cancer patients. High expression of ELK3 and other ECM remodeling-related genes was also closely associated with a worse prognosis of gastric cancer patients. These findings suggested that ELK3 acts as an important regulator of gastric cancer dissemination by regulating ECM remodeling.
 
Overall design Gene expression comparison with or without ELK3; between SNU638 wild type and ELK3 knockdown.
 
Contributor(s) Lee M, Cho H, Park K, Jung H
Citation(s) 35409069
Submission date Aug 10, 2021
Last update date Apr 20, 2022
Contact name Minwook Lee
E-mail(s) minwook1995@gmail.com
Organization name CHA University
Street address 335 Pangyo-ro, Bundang-gu
City Seongnam-si
State/province Gyeonggi
ZIP/Postal code 13488
Country South Korea
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (4)
GSM5512746 SNU638_WT_1
GSM5512747 SNU638_siELK3_1
GSM5512748 SNU638_WT_2
Relations
BioProject PRJNA753553
SRA SRP331973

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE181840_RAW.tar 560.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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