NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE180474 Query DataSets for GSE180474
Status Public on Jul 23, 2021
Title Differential DNA methylation and changing cell type proportions as fibrotic stage progresses in NAFLD
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome wide DNA methylation profiling of normal and NAFLD liver samples. The Illumina Infinium MethylationEPIC BeadChip kit was used to obtain DNA methylation profiles across CpGs.
 
Overall design Bisulfite converted DNA from the samples was hybridised to Illumina Infinium MethylationEPIC BeadChip
 
Contributor(s) Johnson ND, Wu X, Still CD, Chu X, Petrick AT, Gerhard GS, Conneely KN, DiStefano JK
Citation(s) 34353365
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 DK107735 Epigenetic markers of severity in nonalcoholic fatty liver disease TRANSLATIONAL GENOMICS RESEARCH INSTITUTE Johanna K DiStefano
Submission date Jul 20, 2021
Last update date Aug 11, 2021
Contact name Karen Conneely
E-mail(s) kconnee@emory.edu
Organization name Emory University
Street address 615 Michael Street
City Atlanta
State/province GA
ZIP/Postal code 30322
Country USA
 
Platforms (1)
GPL21145 Infinium MethylationEPIC
Samples (341)
GSM5463247 genomic DNA from liver 1
GSM5463248 genomic DNA from liver 2
GSM5463249 genomic DNA from liver 3
Relations
BioProject PRJNA748381

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE180474_MatrixProcessed.csv.gz 2.5 Gb (ftp)(http) CSV
GSE180474_MatrixSignalIntensities.csv.gz 1.5 Gb (ftp)(http) CSV
GSE180474_RAW.tar 161.2 Mb (http)(custom) TAR
Processed data are available on Series record
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap