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| Status |
Public on May 12, 2022 |
| Title |
Essential role of Cp190 in physical and regulatory boundary formation in Drosophila |
| Organism |
Drosophila melanogaster |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
35559678 |
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| Submission date |
Jul 19, 2021 |
| Last update date |
Jun 01, 2022 |
| Contact name |
Maria Cristina Gambetta |
| E-mail(s) |
mariacristina.gambetta@unil.ch
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| Organization name |
University of Lausanne
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| Department |
Center for Integrative Genomics
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| Street address |
Genopode Building
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| City |
Lausanne |
| ZIP/Postal code |
1015 |
| Country |
Switzerland |
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| Platforms (2) |
| GPL21306 |
Illumina HiSeq 4000 (Drosophila melanogaster) |
| GPL25244 |
Illumina NovaSeq 6000 (Drosophila melanogaster) |
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| Samples (48)
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| GSM5461672 |
Cp190 ChIP, CTCF[0], rep1 |
| GSM5461673 |
Cp190 ChIP, CTCF[0], rep2 |
| GSM5461674 |
Cp190 ChIP, CTCF[0], rep3 |
| GSM5461675 |
Cp190 ChIP, WT[0], rep1 |
| GSM5461676 |
Cp190 ChIP, WT[0], rep2 |
| GSM5461677 |
Cp190 ChIP, WT[0], rep3 |
| GSM5461678 |
CTCF ChIP, Cp190[0], rep2 |
| GSM5461679 |
CTCF ChIP, Cp190[0], rep3 |
| GSM5461680 |
CTCF ChIP, CTCF[0], rep1 |
| GSM5461681 |
CTCF ChIP, CTCF[0], rep2 |
| GSM5461682 |
CTCF ChIP, CTCF[0], rep3 |
| GSM5461683 |
CTCF ChIP, WT[0], rep1 |
| GSM5461684 |
CTCF ChIP, WT[0], rep2 |
| GSM5461685 |
CTCF ChIP, WT[0], rep3 |
| GSM5461686 |
Cp190 ChIP, WT larval CNS, rep1 |
| GSM5461687 |
Cp190 ChIP, WT larval CNS, rep2 |
| GSM5461688 |
Cp190 ChIP, Cp190[KO] larval CNS, rep1 |
| GSM5461689 |
Cp190 ChIP, Cp190[KO] larval CNS, rep2 |
| GSM5461690 |
Cp190 ChIP, su(Hw)[KO] larval CNS, rep1 |
| GSM5461691 |
Cp190 ChIP, su(Hw)[KO] larval CNS, rep2 |
| GSM5461692 |
Hi-C_embryo_Cp190_0_rep1 |
| GSM5461693 |
Hi-C_embryo_Cp190_0_rep2 |
| GSM5461694 |
Hi-C_embryo_Cp190_0_rep3 |
| GSM5461695 |
Hi-C_embryo_Cp190_0_rep4 |
| GSM5461696 |
Hi-C_embryo_CTCF_0_rep1 |
| GSM5461697 |
Hi-C_embryo_CTCF_0_rep2 |
| GSM5461698 |
Hi-C_embryo_CTCF_0_rep3 |
| GSM5461699 |
Hi-C_embryo_CTCF_0_rep4 |
| GSM5461700 |
Hi-C_embryo_CTCF_0_Cp190_0_rep1 |
| GSM5461701 |
Hi-C_embryo_CTCF_0_Cp190_0_rep2 |
| GSM5461702 |
Hi-C_embryo_CTCF_0_Cp190_0_rep3 |
| GSM5461703 |
Hi-C_embryo_CTCF_0_Cp190_0_rep4 |
| GSM5461704 |
Hi-C_embryo_WT_0_rep1 |
| GSM5461705 |
Hi-C_embryo_WT_0_rep2 |
| GSM5461706 |
Hi-C_embryo_WT_0_rep3 |
| GSM5461707 |
Hi-C_embryo_WT_0_rep4 |
| GSM5813721 |
WT 2-6 hour old embryos, rep1 |
| GSM5813722 |
WT 2-6 hour old embryos, rep2 |
| GSM5813723 |
WT 2-6 hour old embryos, rep3 |
| GSM5813724 |
Cp190[0] 2-6 hour old embryos, rep1 |
| GSM5813725 |
Cp190[0] 2-6 hour old embryos, rep2 |
| GSM5813726 |
Cp190[0] 2-6 hour old embryos, rep3 |
| GSM5813727 |
SF1[KO] 2-6 hour old embryos, rep1 |
| GSM5813728 |
SF1[KO] 2-6 hour old embryos, rep2 |
| GSM5813729 |
SF1[KO] 2-6 hour old embryos, rep3 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE180374 |
Essential role of Cp190 in physical and regulatory boundary formation in Drosophila [ChIP-seq] |
| GSE180375 |
Essential role of Cp190 in physical and regulatory boundary formation in Drosophila [HiC] |
| GSE193530 |
Essential role of Cp190 in physical and regulatory boundary formation in Drosophila [Capture-C] |
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| Relations |
| BioProject |
PRJNA748025 |
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