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Series GSE180160 Query DataSets for GSE180160
Status Public on Sep 22, 2021
Title Rat colonic tissue transcriptome with dietary intervention by freeze-dried baby spinach (10% w/w in AIN-93 diet)
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary Polyposis in rat colon (Pirc) model harbors an Apc mutation and mimics human Familial Adenomatous Polyposis (FAP), allowing for intervention studies (e.g., PMID: 27706811, PMID: 30643017). RNA-sequencing of adenomatous polyps and normal colon identified genes altered by dietary spinach consumption.
 
Overall design RNA-seq analyses of transcriptome from rat colon tumors and normal colon samples.
 
Contributor(s) Chen Y, Li J, Dashwood WM, Dashwood R
Citation(s) 34494932
Submission date Jul 15, 2021
Last update date Sep 22, 2021
Contact name Jia Li
E-mail(s) jiali@tamu.edu
Organization name Texas A&M U Health Science Center
Department CEDP
Lab Jia Li Lab
Street address 2121 W HOLCOMBE BLVD
City Houston
State/province Texas
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL20084 Illumina NextSeq 500 (Rattus norvegicus)
Samples (36)
GSM5454464 Pirc rat with no tumor not fed with spinach, PCN1_RNAseq
GSM5454465 Pirc rat with no tumor not fed with spinach, PCN2_RNAseq
GSM5454466 Pirc rat with no tumor not fed with spinach, PCN3_RNAseq
Relations
BioProject PRJNA746797
SRA SRP328481

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE180160_Pirc-Spinach-RNAseq-RPKM.xlsx 2.0 Mb (ftp)(http) XLSX
GSE180160_Pirc-Spinach-miRNA-exp.csv.gz 37.0 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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