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Series GSE179935 Query DataSets for GSE179935
Status Public on Oct 19, 2021
Title Cilia locally synthesize proteins to sustain their ultrastructure and functions
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Cilia are microtubule-based hair-like organelles propelling locomotion and extracellular liquid flow or sensing environmental stimuli. As cilia are diffusion barrier-gated subcellular compartments, their protein components are thought to come from the cell body through intraflagellar transport or diffusion. Here we show that cilia locally synthesize proteins to maintain their ultrastructure and functions. Multicilia of mouse ependymal cells were abundant in ribosomal proteins, translation initiation factors, and RNA, including 18S rRNA and tubulin mRNA. The cilia actively generated nascent peptides, including those of tubulin. FMRP, an RNA-binding component of messenger ribonucleoprotein granules critical for local translation, was concentrated in ciliary central lumen. Its depletion by RNAi impaired ciliary nascent peptide production and induced multicilia degeneration. Expression of exogenous FMRP, but not an isoform tethered to mitochondria, rescued the degeneration defects. Therefore, local translation defects in cilia might contribute to the pathology of ciliopathies and other diseases such as Fragile X syndrome.
 
Overall design Purified ciliary mRNA profiles of ctrl-i and Fmr-i1 by deep sequencing with two biological replicates.
 
Contributor(s) Hao K
Citation(s) 34848703
Submission date Jul 12, 2021
Last update date Dec 14, 2021
Contact name Jiehui Chen
E-mail(s) jiehui.chen@childrens.harvard.edu
Organization name Boston Children’s Hospital
Street address 320 Longwood Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (4)
GSM5437371 Purified cilia_Ctrl-i_Exp.1
GSM5437372 Purified cilia_Ctrl-i_Exp.2
GSM5437373 Purified cilia_Fmr-i1-Exp.1
Relations
BioProject PRJNA745942
SRA SRP327966

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Supplementary file Size Download File type/resource
GSE179935_FPKM.xlsx 718.6 Kb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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