|
| Status |
Public on Oct 26, 2021 |
| Title |
RNAseq of Colletotrichum orbiculare on Nicotiana benthamiana |
| Organism |
Colletotrichum orbiculare |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Time course of C. orbiculare infection of the host plant, N. benthamiana, and comparison to in vitro grown tissue (conidia and in vitro grown hyphae) to identify genes that contribute to the infection process by transcript expression profile.
|
| |
|
| Overall design |
Transcript expression profiles of C. orbiculare at 1, 3 and 7 days post inoculation (dpi) of N. benthamiana as well as conidia and in vitro grown hyphae
|
| |
|
| Contributor(s) |
Pamela G |
| Citation(s) |
34756891 |
| BioProject |
PRJNA171217 |
| |
| Submission date |
Jun 24, 2021 |
| Last update date |
Dec 15, 2021 |
| Contact name |
Pamela Gan |
| Organization name |
RIKEN
|
| Department |
RIKEN Plant Sciences
|
| Lab |
Plant Immunity
|
| Street address |
1-7-22 Suehiro-cho, Tsurumi-ku
|
| City |
Yokohama |
| State/province |
Kanagawa |
| ZIP/Postal code |
230-0045 |
| Country |
Japan |
| |
|
| Platforms (1) |
| GPL30309 |
Illumina HiSeq 2000 (Colletotrichum orbiculare) |
|
| Samples (15)
|
| GSM5399785 |
Colletotrichum orbiculare in planta at 1 DPI rep 1 [Co_1DPI-1] |
| GSM5399786 |
Colletotrichum orbiculare in planta at 1 DPI rep 2 [Co_1DPI-2] |
| GSM5399787 |
Colletotrichum orbiculare in planta at 1 DPI rep 3 [Co_1DPI-3] |
| GSM5399788 |
Colletotrichum orbiculare in planta at 3 DPI rep 1 [Co_3DPI-1] |
| GSM5399789 |
Colletotrichum orbiculare in planta at 3 DPI rep 2 [Co_3DPI-2] |
| GSM5399790 |
Colletotrichum orbiculare in planta at 3 DPI rep 3 [Co_3DPI-3] |
| GSM5399791 |
Colletotrichum orbiculare in planta at 7 DPI rep 1 [Co_7DPI-1] |
| GSM5399792 |
Colletotrichum orbiculare in planta at 7 DPI rep 2 [Co_7DPI-2] |
| GSM5399793 |
Colletotrichum orbiculare in planta at 7 DPI rep 3 [Co_7DPI-3] |
| GSM5399794 |
Colletotrichum orbiculare conidia rep 1 [Co_C-1] |
| GSM5399795 |
Colletotrichum orbiculare conidia rep 2 [Co_C-2] |
| GSM5399796 |
Colletotrichum orbiculare conidia rep 3 [Co_C-3] |
| GSM5399797 |
Colletotrichum orbiculare in vitro rep 1 [Co_VH-1] |
| GSM5399798 |
Colletotrichum orbiculare in vitro rep 2 [Co_VH-2] |
| GSM5399799 |
Colletotrichum orbiculare in vitro rep 3 [Co_VH-3] |
|
| Relations |
| SRA |
SRP265434 |
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