|
| Status |
Public on Jun 23, 2021 |
| Title |
Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits |
| Organisms |
Homo sapiens; Rattus norvegicus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
34815310 |
| |
| Submission date |
Jun 23, 2021 |
| Last update date |
Dec 01, 2021 |
| Contact name |
Stephen C.J. Parker |
| Organization name |
University of Michigan
|
| Street address |
100 Washtenaw Avenue
|
| City |
Ann Arbor |
| State/province |
MI |
| ZIP/Postal code |
48109 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
| GPL27452 |
Illumina NovaSeq 6000 (Homo sapiens; Rattus norvegicus) |
|
| Samples (19)
|
| GSM5396670 |
133153-hg19: Human snATAC no FANS rep 2 |
| GSM5396671 |
133154-hg19: Human snATAC FANS rep 2 |
| GSM5396672 |
1846: Human - rat multiome mix (ATAC component) |
| GSM5396673 |
63_20-hg19: Human snATAC 20k nuclei |
| GSM5396674 |
63_40-hg19: Human snATAC 40k nuclei |
| GSM5396675 |
HSM1.bulk.rep1.hg19: Human bulk ATAC, sample HSM1 rep 1 |
| GSM5396676 |
HSM1.bulk.rep2.hg19: Human bulk ATAC, sample HSM1 rep 2 |
| GSM5396677 |
HSM2.bulk.rep1.hg19: Human bulk ATAC, sample HSM2 rep 1 |
| GSM5396678 |
HSM2.bulk.rep2.hg19: Human bulk ATAC, sample HSM2 rep 2 |
| GSM5396679 |
133155-hg19: Human snRNA no FANS rep 1 |
| GSM5396680 |
133156-hg19: Human snRNA FANS rep 1 |
| GSM5396681 |
133157-hg19: Human snRNA no FANS rep 2 |
| GSM5396682 |
133158-hg19: Human snRNA FANS rep 2 |
| GSM5396683 |
1846: Human - rat multiome mix (RNA component) |
| GSM5396684 |
63_20_rna-hg19: Human snRNA 20k nuclei |
| GSM5396685 |
63_40_rna-hg19: Human snRNA 40k nuclei |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE178733 |
Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits [snATAC-seq] |
| GSE178734 |
Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits [snRNA-seq] |
|
| Relations |
| BioProject |
PRJNA740255 |
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