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Series GSE178588 Query DataSets for GSE178588
Status Public on Dec 01, 2021
Title Epigenetic Regulation of Nuclear Lamina-Associated Heterochromatin by HAT1 and the Acetylation of Newly Synthesized Histones [ChIP-seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report that HAT1 regulates chromatin accessibility of large chromosomal domains that correspond to regions of high H3K9 methylation density.
 
Overall design Examination of H3 K9me2 and H3 K9me3 histone marks in mouse immortalized mouse embryonic fibroblasts.
 
Contributor(s) Parhtun MR
Citation(s) 34788845
Submission date Jun 21, 2021
Last update date Dec 02, 2021
Contact name Mark R Parthun
Phone 6142718873
Organization name The Ohio State University
Department Biological Chemistry and Pharmacology
Street address 1060 Carmack Rd.
City Columbus
State/province OH
ZIP/Postal code 43210
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (8)
GSM5394148 KO1_me2
GSM5394149 KO2_me2
GSM5394150 WT1_me2
This SubSeries is part of SuperSeries:
GSE178592 Epigenetic Regulation of Nuclear Lamina-Associated Heterochromatin by HAT1 and the Acetylation of Newly Synthesized Histones
Relations
BioProject PRJNA739697
SRA SRP324877

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE178588_H3K9me2_ChIP_Seq_imMEF.csv.gz 124.0 Kb (ftp)(http) CSV
GSE178588_H3K9me3_ChIP_Seq_imMEF.csv.gz 1.1 Mb (ftp)(http) CSV
GSE178588_RAW.tar 910.2 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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