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Series GSE178534 Query DataSets for GSE178534
Status Public on Jun 20, 2024
Title Transcriptomes of Norway spruce seedling roots
Organism Picea abies
Experiment type Expression profiling by high throughput sequencing
Summary We examine the development of the seedling roots based on two sets of data: one includes segments of the roots and one includes laser capture microdissection (LCM) root tissues.
 
Overall design Regarding the zone data, we collected 4 segments of the root from the root tip (3 x 1mm each and 1 x 2mm). Regarding the LCM data, we collected the QC area, ground tissues, and steles of the elongation and differentiation zones.
 
Contributor(s) Uddenberg D, Nguyen V, Carlsbecker A
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Submission date Jun 21, 2021
Last update date Jun 20, 2024
Contact name Van Nguyen
Organization name Uppsala University
Street address Almas Allé 5
City Uppsala
ZIP/Postal code 75651
Country Sweden
 
Platforms (1)
GPL19695 Illumina HiSeq 2500 (Picea abies)
Samples (40)
GSM5393429 Rep1 Zone 1
GSM5393430 Rep2 Zone 1
GSM5393431 Rep3 Zone 1
Relations
BioProject PRJNA739568
SRA SRP324800

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE178534_Counts_Sample1234_Zones.txt.gz 1.1 Mb (ftp)(http) TXT
GSE178534_Counts_Sample123_LCM.txt.gz 1.1 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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