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GEO accession:
Series GSE178293
Query DataSets for GSE178293
Status
Public on Sep 06, 2022
Title
Roles of Runx2 in chromatin landscape in skeletal development
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36070691
Submission date
Jun 16, 2021
Last update date
Dec 09, 2022
Contact name
Hironori Hojo
E-mail(s)
hojo@tetrapod.t.u-tokyo.ac.jp
Phone
+81-3-5841-1427
Organization name
The University of Tokyo
Department
Center for Disease Biology and Integrative Medicine
Lab
Clinical Biotechnology
Street address
7-3-1 Hongo
City
Bunkyo-ku
State/province
Tokyo
ZIP/Postal code
113-8655
Country
Japan
Platforms (3)
GPL9250
Illumina Genome Analyzer II (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21273
HiSeq X Ten (Mus musculus)
Samples (51)
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GSM5387035
RNA-seq_Col2+_chondrocytes_rep1
GSM5387036
RNA-seq_Col2+_chondrocytes_rep2
GSM5387037
RNA-seq_Col2+_chondrocytes_rep3
GSM5387038
RNA-seq_Col10+_chondrocytes_rep1
GSM5387039
RNA-seq_Col10+_chondrocytes_rep2
GSM5387040
RNA-seq_Col10+_chondrocytes_rep3
GSM5387041
RNA-seq_osteoblasts_Runx2_cHet_KO_rep1
GSM5387042
RNA-seq_osteoblasts_Runx2_cHet_KO_rep2
GSM5387043
RNA-seq_osteoblasts_Runx2_cHom_KO_rep1
GSM5387044
RNA-seq_osteoblasts_Runx2_cHom_KO_rep2
GSM5387124
ATAC-seq_Col2+_chondrocytes_rep1
GSM5387125
ATAC-seq_Col2+_chondrocytes_rep2
GSM5387126
ATAC-seq_Col2+_chondrocytes_rep3
GSM5387127
ATAC-seq_Col10+_chondrocytes_rep1
GSM5387128
ATAC-seq_Col10+_chondrocytes_rep2
GSM5387129
ATAC-seq_Col10+_chondrocytes_rep3
GSM5387130
ATAC-seq_Sp7+_osteoblasts_rep1
GSM5387131
ATAC-seq_Sp7+_osteoblasts_rep2
GSM5387132
ATAC-seq_Sp7+_osteoblasts_rep3
GSM5387133
ChIP-seq_Runx2-FLAG_Cho_rep1
GSM5387134
Input_Runx2-FLAG_Cho_1
GSM5387135
ChIP-seq_Runx2-FLAG_Cho_rep2
GSM5387136
Input_Runx2-FLAG_Cho_2
GSM5387137
ChIP-seq_Runx2-FLAG_Ob_rep1
GSM5387138
Input_Runx2-FLAG_Ob_1
GSM5387139
ChIP-seq_Runx2-FLAG_Ob_rep2
GSM5387140
Input_Runx2-FLAG_Ob_2
GSM5387141
ChIP-seq_Foxa2_Cho
GSM5387142
IgGcontrol_Foxa2_Cho
GSM5387143
ChIP-seq_Jun_Ob
GSM5387144
ATAC-seq_osteoblasts_Runx2_cHet_KO_rep1
GSM5387145
ATAC-seq_osteoblasts_Runx2_cHet_KO_rep2
GSM5387146
ATAC-seq_osteoblasts_Runx2_cHom_KO_rep1
GSM5387147
ATAC-seq_osteoblasts_Runx2_cHom_KO_rep2
GSM5387148
ATAC-seq_3T3cells_day(-2)_rep1
GSM5387149
ATAC-seq_3T3cells_day(-2)_rep2
GSM5387150
ATAC-seq_3T3cells_day0_GFP_rep1
GSM5387151
ATAC-seq_3T3cells_day0_GFP_rep2
GSM5387152
ATAC-seq_3T3cells_day0_Runx2-BioFL_rep1
GSM5387153
ATAC-seq_3T3cells_day0_Runx2-BioFL_rep2
GSM5387154
ATAC-seq_3T3cells_day3_GFP_rep1
GSM5387155
ATAC-seq_3T3cells_day3_GFP_rep2
GSM5387156
ATAC-seq_3T3cells_day3_Runx2-BioFL_rep1
GSM5387157
ATAC-seq_3T3cells_day3_Runx2-BioFL_rep2
GSM5387158
ChIP_Runx2-FLAG_3T3cells_GFP_OM_day0
GSM5387159
ChIP_Runx2-FLAG_3T3cells_Runx2BioFL_OM_day0
GSM5387160
ChIP_Runx2-FLAG_3T3cells_GFP_OM_day3
GSM5387161
ChIP_Runx2-FLAG_3T3cells_Runx2BioFL_OM_day3
GSM5387162
Input_Runx2-FLAG_3T3_day(-2)
GSM5387163
Input_3T3_GFP_OM_day0
GSM5387164
Input_3T3_Runx2BioFL_OM_day0
This SuperSeries is composed of the following SubSeries:
GSE178288
Roles of Runx2 in chromatin landscape in skeletal development [RNA-Seq]
GSE178291
Roles of Runx2 in chromatin landscape in skeletal development [ChIP-Seq, ATAC-Seq]
Relations
BioProject
PRJNA738367
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Supplementary data files not provided
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