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Series GSE178266 Query DataSets for GSE178266
Status Public on Dec 01, 2021
Title Mechanical control of innate immune responses against viral infection revealed in a human Lung Alveolus Chip II
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Mechanical forces associated with breathing play fundamental role in lung development and disease but the molecular pathways remain largely unknown. Here, we used a mechanically actuatable Human Lung Alveolus Chip that recapitulates human lung alveolar type I and type II cell differentiation, alveolar-capillary interface formation, and genome-wide gene expression profiles characteristic of the distal lung to investigate the role of physical forces associated with cyclic breathing motions in lung innate immune responses to viral infection. When the mechanically active Alveolus Chips are infected with influenza H3N2 virus, a cascade of host responses is elicited on-chip, including increased production of cytokines and expression of inflammation-associated genes in pulmonary epithelial and endothelial cells, resulting in enhanced recruitment of circulating immune cells as occurs during viral infection in vivo. Surprisingly, studies carried out in parallel with static chips revealed that physiological breathing motions suppress viral replication by activating protective innate immune responses in epithelial and endothelial cells. This is mediated at least in part through upregulation of S100 calcium-binding protein A7 (S100A7), which binds to the Receptor for Advanced Glycation End Products (RAGE), an inflammatory mediator that is most highly expressed in the lung alveolus in vivo. This mechano-immunological control mechanism is further supported by the finding that existing RAGE inhibitor drugs can suppress production of inflammatory cytokines in response to influenza virus infection in this model. S100A7-RAGE interactions and modulation of mechanical ventilation parameters could therefore serve as new targets for therapeutic intervention in patients infected with influenza and other potential pandemic viruses that cause life-threatening lung inflammation.
 
Overall design This study examined host transcriptome on-chip following H3N2 infection at MOI = 1 at 48 hours post infection
 
Contributor(s) Bai H, Ingber DE
Citation(s) 35396513
Submission date Jun 15, 2021
Last update date Apr 27, 2022
Contact name Haiqing Bai
E-mail(s) dwarfbai@gmail.com
Phone 5855202568
Organization name Wyss Institute
Street address 5th floor, Center for Life Science, 3 Blackfan Circle
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (12)
GSM5386725 Epi_control_rep_1
GSM5386726 Epi_control_rep_2
GSM5386727 Epi_control_rep_3
Relations
BioProject PRJNA738166
SRA SRP324164

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE178266_RAW.tar 52.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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