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Series GSE178056 Query DataSets for GSE178056
Status Public on Jun 15, 2021
Title total RNA-seq from macrophage (ENCSR992IIX)
Project Mouse ENCODE
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Ribo depletion RNA-seq on chromatin fraction RNA which is part of BMDM cell, stimulated with 100 ng/ml Lipid A for 40 minute.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR992IIX/
 
Citation(s) 22955616
BioProject PRJNA66167
Submission date Jun 13, 2021
Last update date Jul 02, 2021
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (3)
GSM5379552 total RNA-seq from macrophage (ENCLB200ZQY)
GSM5379553 total RNA-seq from macrophage (ENCLB335PGQ)
GSM5379554 total RNA-seq from macrophage (ENCLB322WWP)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE178056_RAW.tar 2.6 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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