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Series GSE176928

Query DataSets for GSE176928

Status

Public on Jun 15, 2021

Title

Mint-ChIP-seq from brain (ENCSR073GDR)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

H3K36me3 Mint-ChIP-seq on human PGP1 derived brain organoid

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR073GDR/

Citation(s)

22955616

BioProject

PRJNA63443

Submission date

Jun 11, 2021

Last update date

Jun 17, 2021

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL16791

Illumina HiSeq 2500 (Homo sapiens)

Samples (6)

More...

GSM5370384	Mint-ChIP-seq from brain (ENCLB377YBX)
GSM5370385	Mint-ChIP-seq from brain (ENCLB774UTD)
GSM5370386	Mint-ChIP-seq from brain (ENCLB047MGI)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE176928_ENCFF006VTO_signal_p-value_GRCh38.bigWig	2.6 Gb	(ftp)(http)	BIGWIG
GSE176928_ENCFF139HMR_pseudoreplicated_peaks_GRCh38.bigBed	11.7 Mb	(ftp)(http)	BIGBED
GSE176928_ENCFF141OIV_replicated_peaks_GRCh38.bigBed	6.7 Mb	(ftp)(http)	BIGBED
GSE176928_ENCFF313RJQ_replicated_peaks_GRCh38.bigBed	11.4 Mb	(ftp)(http)	BIGBED
GSE176928_ENCFF316JOD_signal_p-value_GRCh38.bigWig	2.3 Gb	(ftp)(http)	BIGWIG
GSE176928_ENCFF416VBS_signal_p-value_GRCh38.bigWig	2.3 Gb	(ftp)(http)	BIGWIG
GSE176928_ENCFF418JXB_pseudoreplicated_peaks_GRCh38.bigBed	5.4 Mb	(ftp)(http)	BIGBED
GSE176928_ENCFF445TLT_fold_change_over_control_GRCh38.bigWig	2.0 Gb	(ftp)(http)	BIGWIG
GSE176928_ENCFF505BCQ_replicated_peaks_GRCh38.bed.gz	4.0 Mb	(ftp)(http)	BED
GSE176928_ENCFF521VER_signal_p-value_GRCh38.bigWig	2.3 Gb	(ftp)(http)	BIGWIG
GSE176928_ENCFF540MJW_pseudoreplicated_peaks_GRCh38.bed.gz	8.5 Mb	(ftp)(http)	BED
GSE176928_ENCFF541FSJ_fold_change_over_control_GRCh38.bigWig	4.7 Gb	(ftp)(http)	BIGWIG
GSE176928_ENCFF646KUR_pseudoreplicated_peaks_GRCh38.bed.gz	2.7 Mb	(ftp)(http)	BED
GSE176928_ENCFF685SAY_fold_change_over_control_GRCh38.bigWig	3.8 Gb	(ftp)(http)	BIGWIG
GSE176928_ENCFF688VWH_replicated_peaks_GRCh38.bed.gz	4.0 Mb	(ftp)(http)	BED
GSE176928_ENCFF709GBX_replicated_peaks_GRCh38.bigBed	6.5 Mb	(ftp)(http)	BIGBED
GSE176928_ENCFF777MJM_pseudoreplicated_peaks_GRCh38.bed.gz	7.4 Mb	(ftp)(http)	BED
GSE176928_ENCFF799CSH_pseudoreplicated_peaks_GRCh38.bigBed	12.0 Mb	(ftp)(http)	BIGBED
GSE176928_ENCFF890BZZ_fold_change_over_control_GRCh38.bigWig	1.8 Gb	(ftp)(http)	BIGWIG
GSE176928_ENCFF915WCB_replicated_peaks_GRCh38.bed.gz	7.4 Mb	(ftp)(http)	BED
GSE176928_ENCFF934OFO_pseudoreplicated_peaks_GRCh38.bed.gz	7.1 Mb	(ftp)(http)	BED
GSE176928_ENCFF988PDZ_pseudoreplicated_peaks_GRCh38.bigBed	13.2 Mb	(ftp)(http)	BIGBED
GSE176928_RAW.tar	20.0 Kb	(http)(custom)	TAR (of TXT)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record