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Series GSE176865

Query DataSets for GSE176865

Status

Public on Jun 15, 2021

Title

Mint-ChIP-seq from brain (ENCSR246IBU)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

H3K4me3 Mint-ChIP-seq on human PGP1 derived brain organoid

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR246IBU/

Citation(s)

22955616

BioProject

PRJNA63443

Submission date

Jun 10, 2021

Last update date

Jun 17, 2021

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL16791

Illumina HiSeq 2500 (Homo sapiens)

Samples (6)

More...

GSM5370247	Mint-ChIP-seq from brain (ENCLB781MIX)
GSM5370248	Mint-ChIP-seq from brain (ENCLB303QDI)
GSM5370249	Mint-ChIP-seq from brain (ENCLB704DKC)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE176865_ENCFF002ZMR_fold_change_over_control_GRCh38.bigWig	1.4 Gb	(ftp)(http)	BIGWIG
GSE176865_ENCFF013XSN_signal_p-value_GRCh38.bigWig	2.0 Gb	(ftp)(http)	BIGWIG
GSE176865_ENCFF056GTY_pseudoreplicated_peaks_GRCh38.bigBed	5.1 Mb	(ftp)(http)	BIGBED
GSE176865_ENCFF107IWM_replicated_peaks_GRCh38.bed.gz	2.8 Mb	(ftp)(http)	BED
GSE176865_ENCFF185UPI_pseudoreplicated_peaks_GRCh38.bigBed	5.5 Mb	(ftp)(http)	BIGBED
GSE176865_ENCFF190LUC_fold_change_over_control_GRCh38.bigWig	1.5 Gb	(ftp)(http)	BIGWIG
GSE176865_ENCFF324YDQ_fold_change_over_control_GRCh38.bigWig	1.6 Gb	(ftp)(http)	BIGWIG
GSE176865_ENCFF325DXX_fold_change_over_control_GRCh38.bigWig	3.8 Gb	(ftp)(http)	BIGWIG
GSE176865_ENCFF407EWV_signal_p-value_GRCh38.bigWig	2.3 Gb	(ftp)(http)	BIGWIG
GSE176865_ENCFF443FBP_pseudoreplicated_peaks_GRCh38.bed.gz	1.8 Mb	(ftp)(http)	BED
GSE176865_ENCFF544TGN_replicated_peaks_GRCh38.bigBed	5.3 Mb	(ftp)(http)	BIGBED
GSE176865_ENCFF567HYK_replicated_peaks_GRCh38.bed.gz	2.1 Mb	(ftp)(http)	BED
GSE176865_ENCFF585FAV_signal_p-value_GRCh38.bigWig	2.1 Gb	(ftp)(http)	BIGWIG
GSE176865_ENCFF586QHU_pseudoreplicated_peaks_GRCh38.bed.gz	2.5 Mb	(ftp)(http)	BED
GSE176865_ENCFF615CNC_pseudoreplicated_peaks_GRCh38.bigBed	3.6 Mb	(ftp)(http)	BIGBED
GSE176865_ENCFF665YAH_replicated_peaks_GRCh38.bed.gz	2.1 Mb	(ftp)(http)	BED
GSE176865_ENCFF675LWP_pseudoreplicated_peaks_GRCh38.bed.gz	2.9 Mb	(ftp)(http)	BED
GSE176865_ENCFF734SCH_signal_p-value_GRCh38.bigWig	2.3 Gb	(ftp)(http)	BIGWIG
GSE176865_ENCFF737QIU_pseudoreplicated_peaks_GRCh38.bed.gz	2.3 Mb	(ftp)(http)	BED
GSE176865_ENCFF767IXD_pseudoreplicated_peaks_GRCh38.bigBed	4.5 Mb	(ftp)(http)	BIGBED
GSE176865_ENCFF860QRL_replicated_peaks_GRCh38.bigBed	4.0 Mb	(ftp)(http)	BIGBED
GSE176865_ENCFF861HOX_replicated_peaks_GRCh38.bigBed	3.9 Mb	(ftp)(http)	BIGBED
GSE176865_RAW.tar	20.0 Kb	(http)(custom)	TAR (of TXT)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record