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| Status |
Public on Aug 04, 2021 |
| Title |
Comparative study of gene expression in Aspergillus niger solid and submerged growth during sugar beet pulp utilization |
| Platform organism |
Aspergillus niger CBS 513.88 |
| Sample organism |
Aspergillus niger |
| Experiment type |
Expression profiling by array
Third-party reanalysis
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| Summary |
In this study, we compared the gene expression pattern of A. niger grown in liquid sugar beet pulp (SBP) at different time points, a by-product of the sugar industry that consists mainly of cellulose, xyloglucan, and pectin. Finally, we compared A. niger genetic response to liquid SBP to that of the same fungus when grown on solid SBP plates and polygalacturonic acid (PGA).
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| Overall design |
In this study, we aimed to reveal the extent to which A. niger response is comparable when grown on solid and submerged cultures. For this, we first studied the gene expression pattern of A. niger grown in liquid sugar beet pulp (SBP) at different time points, a by-product of the sugar industry that consists mainly of cellulose, xyloglucan, and pectin. Finally, we compared A. niger genetic response to liquid SBP to that of the same fungus when grown on PGA and solid SBP plates (previously deposited with GEO accession GSE66641). Part of PGA and liquid SBP datasets were previously deposited with GEO accession GSE98572 (with Sample ID GSM2600976, GSM2600977,GSM2600984, GSM2600985).
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| Contributor(s) |
Garrigues S, Kun RS, Peng M, Mäkelä MR, de Vries RP |
| Citation(s) |
34431718 |
| |
| Submission date |
Jun 01, 2021 |
| Last update date |
Nov 03, 2021 |
| Contact name |
Ronald de vries |
| E-mail(s) |
fungalphysiology@gmail.com
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| Phone |
+31(0)30-2122600
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| Organization name |
westerdijkinstitute
|
| Street address |
Uppsalalaan 8
|
| City |
Utrecht |
| State/province |
Utrecht |
| ZIP/Postal code |
3584 CT |
| Country |
Netherlands |
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| Platforms (1) |
| GPL6758 |
[dsmM_ANIGERa_anColl] DSM Aspergillus niger CBS513.88 14k v1 |
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| Samples (8)
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| GSM5351982 |
submerged growth on sugar beet pulp for 8 hours biological rep1 |
| GSM5351983 |
submerged growth on sugar beet pulp for 8 hours biological rep2 |
| GSM5351984 |
submerged growth on sugar beet pulp for 24 hours biological rep1 |
| GSM5351985 |
submerged growth on sugar beet pulp for 24 hours biological rep2 |
| GSM5351986 |
fungi growth on 1% polygalacturonic acid for 8 hour rep1 |
| GSM5351987 |
fungi growth on 1% polygalacturonic acid for 8 hour rep2 |
| GSM5351988 |
fungi growth on 1% polygalacturonic acid for 24 hour rep1 |
| GSM5351989 |
fungi growth on 1% polygalacturonic acid for 24 hour rep2 |
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| Relations |
| Reanalysis of |
GSM2600984 |
| Reanalysis of |
GSM2600985 |
| Reanalysis of |
GSM2600976 |
| Reanalysis of |
GSM2600977 |
| Reanalysis of |
GSM1626779 |
| Reanalysis of |
GSM1626780 |
| Reanalysis of |
GSM1626781 |
| Reanalysis of |
GSM1626782 |
| Reanalysis of |
GSM1626783 |
| Reanalysis of |
GSM1626784 |
| Reanalysis of |
GSM1626785 |
| Reanalysis of |
GSM1626786 |
| Reanalysis of |
GSM1626787 |
| Reanalysis of |
GSM1626788 |
| BioProject |
PRJNA734353 |
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