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Series GSE175534 Query DataSets for GSE175534
Status Public on Oct 17, 2022
Title Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP1 shapes 3D enhancer landscapes
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series

The supplementary file CUT_RUN_peak.bed includes the peaks for all SWI/SNF subunits and AP-1 samples in SubSeries GSE175528 and GSE175532, and SubSeries GSE196955 and GSE196958 of SuperSeries GSE196960.
 
Citation(s) 36522426
Submission date May 25, 2021
Last update date Jan 04, 2023
Contact name Xiaofeng Wang
E-mail(s) Xiaofeng.Wang@dartmouth.edu
Organization name Dartmouth College
Department Molecular and Systems Biology
Street address 1 Medical Center Dr, Rubin Building
City Lebanon
State/province NH
ZIP/Postal code 03756
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (62)
GSM5340897 Day 0 pJUN CUT&RUN profiling in SMARCB1 -/- G401 cell line
GSM5340898 Day 0 JUND CUT&RUN profiling in SMARCB1 -/- G401 cell line
GSM5340899 Day 0 JUNB CUT&RUN profiling in SMARCB1 -/- G401 cell line
This SuperSeries is composed of the following SubSeries:
GSE175528 Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP1 shapes 3D enhancer landscapes [AP_1_family]
GSE175529 Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP1 shapes 3D enhancer landscapes [HiChIP]
GSE175530 Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP1 shapes 3D enhancer landscapes [Histone_modification]
Relations
BioProject PRJNA732703

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE175534_CUT_RUN_peak.bed.gz 2.7 Mb (ftp)(http) BED
GSE175534_RAW.tar 3.4 Gb (http)(custom) TAR (of BIGWIG, BW, TXT)
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