|
| Status |
Public on May 22, 2021 |
| Title |
Illumina RNA-seq for bud, leaf and stem of California Valley Oak, Quercus lobata (SW786) |
| Organism |
Quercus lobata |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
STAR aligned RNA-seq reads were used as one of many guides informing gene model annotation of the Valley Oak genome sequence.
|
| |
|
| Overall design |
Iillumina RNA-seq 101+101 nt paired end from bud, leaf & stem tissues
|
| |
|
| Contributor(s) |
Sork VL, Fitz-Gibbon ST, Cokus SJ, Pellegrini M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
May 21, 2021 |
| Last update date |
May 24, 2021 |
| Contact name |
Sorel Tanya Fitz-Gibbon |
| E-mail(s) |
sorel@ucla.edu
|
| Phone |
3109226554
|
| Organization name |
University of California, Los Angeles
|
| Department |
Ecology & Evolutionary Biology
|
| Lab |
Victoria Sork
|
| Street address |
961 Wellesley Ave
|
| City |
Los Angeles |
| State/province |
CALIFORNIA |
| ZIP/Postal code |
90049 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL27543 |
Illumina HiSeq 4000 (Quercus lobata) |
|
| Samples (3) |
| GSM5328916 |
Valley Oak (SW.786) bud RNA short read sequencing (illumina) |
| GSM5328917 |
Valley Oak (SW.786) leaf RNA short read sequencing (illumina) |
| GSM5328918 |
Valley Oak (SW.786) stem RNA short read sequencing (illumina) |
|
| This SubSeries is part of SuperSeries: |
| GSE174829 |
High-quality genome and methylomes illustrate features underlying evolutionary success of oaks. |
|
| Relations |
| BioProject |
PRJNA731859 |
| SRA |
SRP320848 |
