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Series GSE174544 Query DataSets for GSE174544
Status Public on Apr 13, 2022
Title Methylation studies in yellow-bellied marmots
Platform organisms Homo sapiens; Mus musculus; Rattus norvegicus
Sample organism Marmota flaviventris
Experiment type Methylation profiling by array
Summary An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from blood samples from yellow-bellied marmots (Marmota flaviventris).
DNA methylation data from n=159 blood samples. All samples were collected as part of a long-term study of a free-living population of yellow-bellied marmots in the Gunnison National Forest, Colorado (USA), where marmots were captured and blood samples collected biweekly during the their active season (May to August). Genomic DNA was extracted with Qiagen DNeasy blood and tissue kit.
 
Overall design N=159 Blood samples from marmots. Genome annotations of the array can be downloaded from https://github.com/shorvath/MammalianMethylationConsortium
 
Contributor(s) Horvath S, Blumstein D, Pinho G
Citation(s) 35256811, 37563227, 38848365
Submission date May 17, 2021
Last update date Jun 26, 2024
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platforms (1)
GPL28271 Illumina HorvathMammalianMethylChip40 BeadChip
Samples (159)
GSM5319185 Sample1.Yellow-bellied marmot.203531420048_R01C01
GSM5319186 Sample2.Yellow-bellied marmot.203531420048_R02C01
GSM5319187 Sample3.Yellow-bellied marmot.203531420048_R03C01
Relations
BioProject PRJNA730510

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE174544_RAW.tar 119.1 Mb (http)(custom) TAR (of IDAT)
Processed data included within Sample table
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