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Series GSE173884 Query DataSets for GSE173884
Status Public on Apr 07, 2023
Title Nonpathological inflammation drives the development of an avian flight adaptation
Organism Gallus gallus
Experiment type Expression profiling by high throughput sequencing
Summary Bird tails transitioned during the Mesozoic from long to shortened and distally fused. Fusion of the distalmost vertebrae manifests as the bony pygostyle, a trait retained in extant avians that contributes to flight aerodynamics. Here, we investigate the mechanism responsible for pygostyle formation. Transcriptomic profiling and histology reveal that the immune system is responsible for this important adaptation in avian evolutionary history. Pygostyle formation commences with cell death in the intervertebral discs, within the nucleus pulposus and annulus fibrosus. The nucleus pulposus, observed for the first time in birds, forms differently in fused versus unfused regions of the tail, and its deterioration in the pygostyle is crucial to the cascade of events that eventually lead to ankylosis. The Complement cascade, vasculogenesis, neutrophil-like cell function, involvement of both the innate and adaptive immune systems and multiple additional events mirror those observed during bone fracture healing. The key common denominator in both processes that differentiates them from general endochondral ossification is an inflammatory response. These studies suggest that a universal mechanism for bone repair has been co-opted in avian evolution for the formation of a flight-adapted tail structure.
 
Overall design 8-10 week old chicken Intervertebral disc RNA samples. 4 samples from degenerating pygostyle ivds and 4 from permanent ivds.
 
Contributor(s) Sheheen J, Chapman S, Rashid D
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Submission date May 04, 2021
Last update date Apr 07, 2023
Contact name Joseph Robert Sheheen
E-mail(s) jshehee@g.clemson.edu
Organization name Clemson University
Department Biological Sciences
Lab Dr. Susan Chapman
Street address 132 Long Hall
City Clemson
State/province SC
ZIP/Postal code 29634
Country USA
 
Platforms (1)
GPL27748 NextSeq 550 (Gallus gallus)
Samples (8)
GSM5282339 Permanent IVD 1 [F12]
GSM5282340 Permanent IVD 2 [F10]
GSM5282341 Permanent IVD 3 [F9]
Relations
BioProject PRJNA727400
SRA SRP318503

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173884_GEOallcounts.txt.gz 2.6 Mb (ftp)(http) TXT
GSE173884_LFCshrink_STARDE_pygostyleVfree_IVD.txt.gz 949.9 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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