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Series GSE173555 Query DataSets for GSE173555
Status Public on Sep 12, 2022
Title Crosstalk between macrophages and fibro-adipogenic progenitors during muscle regeneration
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The purpose of this study is to investigate how immune cells (macrophages) are closely linked with fibro-adipogenic progenitors (FAPs) during recovery processe.
We report that the depletion of Mrc1+ (gene encoding CD206) M2-like macrophages promoted the recovery of muscle after injury. A total RNA sequence analysis of whole muscle or isolated FAPs revealed that the depletion of Mrc1+ M2-like macrophages resulted in the activation of FAPs. Activated FAPs secrete follistatin (Fst), a promyogenic factor, boosting the recovery process. We further determined that the knockdown of FAPs-derived Fst delayed the recovery process. Mechanistically, Mrc1+ M2-like macrophages-specific TGF-b1 inhibited the activation of FAPs, and the FAPs failed to secrete Fst.
 
Overall design mRNA profiles of whole muscle 4,7,14 post-day injury (cardiotoxin [CTX]-induced muscle injury) and mRNA profile of isolated FAPs from 7 post-day injured muscle of wild type (WT) and CD206DTR mice were generated by deep sequencing.
 
Contributor(s) Yumiko O, Ichiro M
Citation(s) 36411280
Submission date Apr 29, 2021
Last update date Dec 12, 2022
Contact name Ichiro Manabe
E-mail(s) manabe-tky@umin.ac.jp
Organization name Chiba University
Street address 1-8-1 Inohana, Chuo
City Chiba
ZIP/Postal code 260-8670
Country Japan
 
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (14)
GSM5269662 CD206ctl_CTX_d4_1
GSM5269663 CD206ctl_CTX_d4_2
GSM5269664 CD206ctl_CTX_d7_1
Relations
BioProject PRJNA726154
SRA SRP316877

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173555_RAW.tar 1.0 Gb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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