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Series GSE173231 Query DataSets for GSE173231
Status Public on Apr 24, 2021
Title Single cell immune profiling of human cervix biopsies
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary We have used 10x singel cell immune profiling methods to analyze gene expression and TCR clonotypes simultaneously of freshly isolated human ectocervix biopsies. Our main goal is to define phenotypes and clonotypes of different subsets of tissue resident CD8 T cells in normal human cervix tissues.
 
Overall design We analyzed single cell gene expression and TCR clonotypes of 10 cervix samples from eight subjects.
 
Contributor(s) Peng T
Citation(s) 34156975
Submission date Apr 23, 2021
Last update date Jun 29, 2021
Contact name Tao Peng
E-mail(s) tpeng@u.washington.edu
Phone 206-667-5861
Organization name University of Washington
Department Medicine
Street address 1100 Fairview Ave N/FHCRC/E5-110
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platforms (2)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (20)
GSM5263982 CX1_1: Single cell 5' gene expression of fresh cevix biopsy/whole cell lysate/subject 1
GSM5263983 CX1_2: Single cell TCR of fresh cevix biopsy/whole cell lysate/subject 1
GSM5263984 CX2_1: Single cell 5' gene expression of fresh cevix biopsy/whole cell lysate/subject 2
Relations
BioProject PRJNA724733
SRA SRP316097

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173231_RAW.tar 107.9 Mb (http)(custom) TAR (of CSV, MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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