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Series GSE172935 Query DataSets for GSE172935
Status Public on Apr 22, 2021
Title ATAC-seq from kidney (ENCSR389CLN)
Project Mouse ENCODE
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ATAC-seq on postnatal p0 mouse kidney

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR389CLN/
 
Citation(s) 22955616
BioProject PRJNA63471
Submission date Apr 21, 2021
Last update date May 07, 2021
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (2)
GSM5259096 ATAC-seq from kidney (ENCLB497HBT)
GSM5259097 ATAC-seq from kidney (ENCLB678YRF)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172935_ENCFF055HYI_IDR_thresholded_peaks_mm10.bed.gz 1.1 Mb (ftp)(http) BED
GSE172935_ENCFF154GXJ_pseudoreplicated_peaks_mm10.bed.gz 2.4 Mb (ftp)(http) BED
GSE172935_ENCFF203LPK_conservative_IDR_thresholded_peaks_mm10.bigBed 2.4 Mb (ftp)(http) BIGBED
GSE172935_ENCFF357MTG_IDR_thresholded_peaks_mm10.bigBed 2.5 Mb (ftp)(http) BIGBED
GSE172935_ENCFF363HQJ_IDR_ranked_peaks_mm10.bed.gz 5.2 Mb (ftp)(http) BED
GSE172935_ENCFF365OXE_fold_change_over_control_mm10.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSE172935_ENCFF407FOM_IDR_ranked_peaks_mm10.bed.gz 5.2 Mb (ftp)(http) BED
GSE172935_ENCFF515IHW_replicated_peaks_mm10.bigBed 5.7 Mb (ftp)(http) BIGBED
GSE172935_ENCFF551NLD_conservative_IDR_thresholded_peaks_mm10.bed.gz 1.1 Mb (ftp)(http) BED
GSE172935_ENCFF563TRA_signal_p-value_mm10.bigWig 778.9 Mb (ftp)(http) BIGWIG
GSE172935_ENCFF838ZVF_replicated_peaks_mm10.bed.gz 2.4 Mb (ftp)(http) BED
GSE172935_ENCFF960SBH_pseudoreplicated_peaks_mm10.bigBed 5.7 Mb (ftp)(http) BIGBED
GSE172935_RAW.tar 2.1 Gb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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