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Series GSE172813 Query DataSets for GSE172813
Status Public on Apr 22, 2021
Title ATAC-seq from lung (ENCSR627OCR)
Project Mouse ENCODE
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ATAC-seq on embryonic e16.5 mouse lung

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR627OCR/
 
Citation(s) 22955616
BioProject PRJNA63471
Submission date Apr 21, 2021
Last update date May 07, 2021
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (2)
GSM5258847 ATAC-seq from lung (ENCLB229NOX)
GSM5258848 ATAC-seq from lung (ENCLB481OLK)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172813_ENCFF025YLE_pseudoreplicated_peaks_mm10.bed.gz 4.0 Mb (ftp)(http) BED
GSE172813_ENCFF111KUY_conservative_IDR_thresholded_peaks_mm10.bigBed 4.3 Mb (ftp)(http) BIGBED
GSE172813_ENCFF210SKW_IDR_thresholded_peaks_mm10.bed.gz 2.1 Mb (ftp)(http) BED
GSE172813_ENCFF248THY_IDR_ranked_peaks_mm10.bed.gz 8.6 Mb (ftp)(http) BED
GSE172813_ENCFF359GBF_fold_change_over_control_mm10.bigWig 1.3 Gb (ftp)(http) BIGWIG
GSE172813_ENCFF385RNA_replicated_peaks_mm10.bed.gz 3.8 Mb (ftp)(http) BED
GSE172813_ENCFF409XPM_pseudoreplicated_peaks_mm10.bigBed 8.9 Mb (ftp)(http) BIGBED
GSE172813_ENCFF746DTE_IDR_ranked_peaks_mm10.bed.gz 8.2 Mb (ftp)(http) BED
GSE172813_ENCFF763HQH_conservative_IDR_thresholded_peaks_mm10.bed.gz 2.0 Mb (ftp)(http) BED
GSE172813_ENCFF866VGN_IDR_thresholded_peaks_mm10.bigBed 4.6 Mb (ftp)(http) BIGBED
GSE172813_ENCFF882CJR_replicated_peaks_mm10.bigBed 8.5 Mb (ftp)(http) BIGBED
GSE172813_ENCFF897GPF_signal_p-value_mm10.bigWig 798.3 Mb (ftp)(http) BIGWIG
GSE172813_RAW.tar 2.9 Gb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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