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Series GSE172694 Query DataSets for GSE172694
Status Public on Apr 22, 2021
Title ATAC-seq from intestine (ENCSR079GOY)
Project Mouse ENCODE
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ATAC-seq on postnatal p0 mouse intestine

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR079GOY/
 
Citation(s) 22955616
BioProject PRJNA63471
Submission date Apr 21, 2021
Last update date May 07, 2021
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (2)
GSM5258681 ATAC-seq from intestine (ENCLB362STB)
GSM5258682 ATAC-seq from intestine (ENCLB199HRA)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172694_ENCFF018ZHC_fold_change_over_control_mm10.bigWig 1.2 Gb (ftp)(http) BIGWIG
GSE172694_ENCFF060BNV_IDR_thresholded_peaks_mm10.bigBed 3.4 Mb (ftp)(http) BIGBED
GSE172694_ENCFF123IIQ_IDR_ranked_peaks_mm10.bed.gz 6.0 Mb (ftp)(http) BED
GSE172694_ENCFF131BKO_IDR_thresholded_peaks_mm10.bed.gz 1.6 Mb (ftp)(http) BED
GSE172694_ENCFF272QDF_replicated_peaks_mm10.bigBed 6.1 Mb (ftp)(http) BIGBED
GSE172694_ENCFF306RUA_signal_p-value_mm10.bigWig 1.0 Gb (ftp)(http) BIGWIG
GSE172694_ENCFF404EGA_IDR_ranked_peaks_mm10.bed.gz 5.8 Mb (ftp)(http) BED
GSE172694_ENCFF407YOM_pseudoreplicated_peaks_mm10.bigBed 6.3 Mb (ftp)(http) BIGBED
GSE172694_ENCFF584GGK_conservative_IDR_thresholded_peaks_mm10.bigBed 3.3 Mb (ftp)(http) BIGBED
GSE172694_ENCFF627SRX_replicated_peaks_mm10.bed.gz 2.7 Mb (ftp)(http) BED
GSE172694_ENCFF720AJC_conservative_IDR_thresholded_peaks_mm10.bed.gz 1.5 Mb (ftp)(http) BED
GSE172694_ENCFF888JAP_pseudoreplicated_peaks_mm10.bed.gz 2.8 Mb (ftp)(http) BED
GSE172694_RAW.tar 4.6 Gb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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