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Series GSE172544 Query DataSets for GSE172544
Status Public on Jun 03, 2022
Title Transcript analysis of hESC-derived neurons treated with maturation promoting compounds
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary High-content screening identified compounds that promote maturation of human neurons derived from pluripotent stem cells. We sequenced total RNA from neurons treated with these drugs to detemrine their effect at the transcriptome level.
 
Overall design Bulk RNA-seq from neurons treated with maturation factors or DMSO for 7 days. 3 Biologial replicates from independent differentiations.
 
Contributor(s) Hergenreder E, Studer L
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Submission date Apr 21, 2021
Last update date Aug 15, 2023
Contact name Emiliano Hergenreder
E-mail(s) ejhergenreder@gmail.com
Organization name Memorial Sloan Kettering Cancer Center
Lab Studer
Street address 430 67TH ST
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (30)
GSM5258323 RNA-seq_DMSO Replicate 1
GSM5258324 RNA-seq_DMSO Replicate 2
GSM5258325 RNA-seq_DMSO Replicate 3
Relations
BioProject PRJNA723602
SRA SRP315770

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172544_DESeq2_DMSO_GE.csv.gz 1.6 Mb (ftp)(http) CSV
GSE172544_DESeq2_GENtoniK_DMSO.csv.gz 1.6 Mb (ftp)(http) CSV
GSE172544_DESeq2_NK_DMSO.csv.gz 1.5 Mb (ftp)(http) CSV
GSE172544_iPSC_2_DESeq2_GENtoniK_DMSO.csv.gz 1.6 Mb (ftp)(http) CSV
GSE172544_iPSC_3_DESeq2_GENtoniK_DMSO.csv.gz 1.0 Mb (ftp)(http) CSV
GSE172544_iPSC_DESeq2_GENtonik_DMSO.csv.gz 1.4 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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