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Series GSE171848 Query DataSets for GSE171848
Status Public on May 21, 2021
Title A 3D renal proximal tubule on chip model phenocopies Lowe syndrome and Dent II disease tubulopathy.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Lowe syndrome and Dent II disease are X-linked monogenetic diseases characterised by a renal reabsorption defect in the proximal tubules and caused by mutations in the OCRL gene, which codes for an inositol-5-phosphatase. The life expectancy of patients suffering from Lowe syndrome is largely reduced because of the development of chronic kidney disease and related complications. There is a need for physiological human in-vitro models for Lowe syndrome/Dent II disease to study underpinning disease mechanisms and to identify and characterise potential drugs and drug targets. Here we describe a proximal tubule organ on chip model combining 3D tubule architecture with fluid flow shear stress, which phenocopies hallmarks of Lowe syndrome/Dent II disease. We demonstrate the principal suitability of our in-vitro model for drug target validation. Furthermore, using this model we demonstrate that proximal tubule cells lacking OCRL expression upregulate markers typical for epithelial-mesenchymal transition (EMT) including the transcription factor SNAI2/Slug and show increased collagen expression and deposition, which potentially contributes to interstitial fibrosis and disease progression as observed in Lowe syndrome and Dent II disease.
 
Overall design Differential gene expression analysis between OCRL KO_HK2 cells (2 cell lines) vs WT HK2 cells cultured in 3D tubule architecture with fluid flow applying shear stress.
 
Contributor(s) Naik S, Ongenaert M, Erdmann K
Citation(s) 34069732
Submission date Apr 11, 2021
Last update date Aug 20, 2021
Contact name Dr. Kai Erdmann
Organization name University of Sheffield
Department Biomedical Science
Street address Western Bank
City Sheffield
State/province South Yorkshire
ZIP/Postal code S10 2TN
Country United Kingdom
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (9)
GSM5235741 WT_3D_F1
GSM5235742 WT_3D_F2
GSM5235743 WT_3D_F3
Relations
BioProject PRJNA721193
SRA SRP314353

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE171848_TPMs_genesummarised.txt.gz 1.2 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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