NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE171646 Query DataSets for GSE171646
Status Public on Aug 01, 2024
Title Nitrogen fertilizer reduces salicylic acid-mediated immunity by activating gibberellin signaling in rice
Organism Oryza sativa Japonica Group
Experiment type Expression profiling by high throughput sequencing
Summary The environment plays important role in the interaction between plant hosts and pathogens. The application of chemical fertilizer is a crucial breeding technology to enhance crop yield since last century. As the most abundant fertilizer, nitrogen often increases disease susceptibility for crop plants. The underlying mechanism for nitrogen induced disease susceptibility is elusive. Here we found that nitrogen application activate gibberellin signaling by degradation of SLR1, the repressor protein in gibberellin signaling, which result in simultaneously promoting plant growth and disease susceptibility. SLR1, physically interacts with OsNPR1 and consequently facilitate OsNPR1 mediated defense responses. Transcriptome analysis showed that OsNPR1-SLR1 module plays a vital role in transcriptional reprogramming for both disease resistance and plant growth. Increase of SLR1 protein level in gibberellin deficient rice plants neutralizes disease susceptibility but sacrifice yield enhancement under high nitrogen supply. Mutation in SD1, encoding OsGA2ox2, produced more grains than WT,and maintains disease resistance under high nitrogen supply. Taken together, our work reveals the molecular mechanism underlying nitrogen-induced disease susceptibility, and demonstrates that the application of sd1 rice varieties prevent the tradeoff between disease susceptibility and yield increase under high nitrogen supply.
 
Overall design Given OsNPR1 physically interacting with SLR1, it is possible OsNPR1-SLR1 protein complex co-regulate transcription.We used WT, OsNPR1-OE, OsNPR1-OE/slr1-1, slr1-1 to conduct RNA-seq to examine common targets of OsNPR1 and SLR1.
 
Contributor(s) Zhang X, Yang D
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 07, 2021
Last update date Aug 01, 2024
Contact name xiaohan zhang
E-mail(s) 2016201044@njau.edu.cn
Organization name Nanjing Agricultural University
Street address Weigang
City Nanjing
ZIP/Postal code 210095
Country China
 
Platforms (1)
GPL27860 Illumina NovaSeq 6000 (Oryza sativa Japonica Group)
Samples (12)
GSM5229656 WT-R1
GSM5229657 WT-R2
GSM5229658 WT-R3
Relations
BioProject PRJNA720404
SRA SRP313840

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE171646_RAW.tar 3.2 Gb (http)(custom) TAR (of TDF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap