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Series GSE169450 Query DataSets for GSE169450
Status Public on Jun 02, 2022
Title A TRIM66/DAX1/Dux axis suppresses the totipotent 2-cell-like state in murine embryonic stem cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary 2 cell-like cells (2CLCs) resemble blastomeres of the 2-cell stage of embryo and are used as an in vitro model to understand the onset of zygotic genome activation (ZGA). 2CLCs comprise only ~1% of murine embryonic stem cells (mESCs). However, their specification remains unclear. Here, we show that TRIM66 restricts 2CLCs specification by repressing Dux in mESCs. Mutational assays and a solved crystal structure demonstrate that TRIM66’s PHD finger recognizes H3K4K9me3 and Bromo domain recognizes H3K18ac. Moreover, TRIM66 functions as a bridge factor to recruit the transcriptional repressor Dax1 to the Dux promoter preventing expansion of 2CLCs in mESCs. Rrecruitment of Dax1 to the Dux promoter requires TRIM66 and TRIM66’s repressive effect on Dux transcription is dependent on Dax1. Thus, beyond expanding the scope of known regulators of 2CLCs and showing TRIM66 as a chromatin-modification reader, our study suggests multiple strategies for harnessing the biotechnological and medical potential of 2CLCs.
 
Overall design Identifiy the transcriptome and histone modification changes in different mouse embryonic stem cells
 
Contributor(s) Zuo F, Yan K, Liefke R, Xi Q
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Submission date Mar 23, 2021
Last update date Jun 06, 2022
Contact name Zuo Feifei
E-mail(s) zff15@mails.tsinghua.edu.cn
Organization name Tsinghua University
Street address Zhongguancun Street, Haidian District
City Beijing
ZIP/Postal code 100084
Country China
 
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (29)
GSM5203303 GFP-DAX1-ChIP_TRIM66 OE
GSM5203304 GFP-DAX1-ChIP
GSM5203305 GFP-TRIM66-ChIP
Relations
BioProject PRJNA716627
SRA SRP311833

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE169450_CTR-Dax1_Dux_KD-cntTable.xlsx 872.9 Kb (ftp)(http) XLSX
GSE169450_CTR-Dax1_KD-cntTable.xlsx 1.1 Mb (ftp)(http) XLSX
GSE169450_GFP_EV-GFP_TRIM66-cntable.xlsx 884.5 Kb (ftp)(http) XLSX
GSE169450_RAW.tar 2.8 Gb (http)(custom) TAR (of BW)
GSE169450_WT-Trim66_KO-cntTable.xlsx 1.1 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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