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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 01, 2022 |
| Title |
Gene expression profile of murine proneural glioblastoma |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Murine proneural (PN) glioblastomas were induced by lentiviral vector expressing PDGFB and shRNA targeting p53. Tumor tissues were isolaed from mice reaching end point stage. RNA was isolated using RNAeasy kit according to manufacturer's protocol. cDNA libraries were preaped using TruSeq RNA sample Prep kit (Illumina). RNA sequencing was performed using
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| Overall design |
Four PN glioblastoma samples and 2 controls by standard RNAseq method. Normalized against mesenchymal samples from GSE73127.
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| Contributor(s) |
Magod P, Friedmann-Morvinski D, Shapira G |
| Citation(s) |
34348160 |
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| Submission date |
Mar 22, 2021 |
| Last update date |
Jul 01, 2022 |
| Contact name |
Guy Shapira |
| E-mail(s) |
guyspersonal@gmail.com
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| Organization name |
Tel Aviv University
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| Street address |
Chaim Levanon 30
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| City |
Tel Aviv |
| ZIP/Postal code |
6997801 |
| Country |
Israel |
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| Platforms (2) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (13)
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| GSM5194468 |
mouse glioblastoma, PN6 |
| GSM5194469 |
normal mouse brain, C2 |
| GSM5194470 |
normal mouse brain, C5 |
| GSM5194471 |
normal mouse brain, AAE3 |
| GSM5194472 |
normal mouse brain, AAE4 |
| GSM5194473 |
normal mouse brain, AAE5 |
| GSM5194474 |
mouse glioblastoma, AAE6 |
| GSM5194475 |
mouse glioblastoma, AAE7 |
| GSM5194476 |
mouse glioblastoma, AAE8 |
| GSM5194477 |
mouse glioblastoma, AAE9 |
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| Relations |
| BioProject |
PRJNA716179 |
| SRA |
SRP311579 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE169286_RAW.tar |
2.9 Mb |
(http)(custom) |
TAR (of TSV) |
| GSE169286_normalized_counts.tsv.gz |
1.6 Mb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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