|
| Status |
Public on Apr 07, 2022 |
| Title |
Investigating patterns of chromatin accessibility, histone modifications, and insulation involved in rattlesnake venom gene regulation |
| Organism |
Crotalus viridis |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We generated ATAC-seq data for pre- and post-extraction venom gland samples and H3K4me3, H3K27ac, and CTCF ChIP-seq from post-extraction venom gland samples from the Prairie Rattlesnake to investigate patterns of chromatin accessibility, transcription factor binding, and insulation during venom production, and to identify open promoters and active enhancer regions.
|
| |
|
| Overall design |
ATAC-seq and ChIP-seq (H3K27ac, H3K4me3, and CTCF) in a rattlesnake venom gland
|
| |
|
| Contributor(s) |
Perry BW, Castoe TA |
| Citation(s) |
35649579 |
| |
| Submission date |
Mar 19, 2021 |
| Last update date |
Jul 07, 2022 |
| Contact name |
Blair Perry |
| Organization name |
The University of Texas at Arlington
|
| Department |
Biology
|
| Street address |
501 S. Nedderman Dr, Life Sciences Building RM 337
|
| City |
Arlington |
| State/province |
TX |
| ZIP/Postal code |
76019 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL29886 |
Illumina NextSeq 500 (Crotalus viridis) |
|
| Samples (6)
|
| GSM5183958 |
Crotalus viridis post-extraction venom gland CTCF ChIP-seq |
| GSM5183959 |
Crotalus viridis post-extraction venom gland H3K27ac ChIP-seq |
| GSM5183960 |
Crotalus viridis post-extraction venom gland H3K4me3 ChIP-seq |
| GSM5573742 |
RVG_1: Crotalus viridis post-extraction venom gland ATAC-seq |
| GSM5573743 |
RVG_4: Crotalus viridis post-extraction venom gland ATAC-seq |
| GSM5573744 |
RVG_11: Crotalus viridis post-extraction venom gland ATAC-seq |
|
| Relations |
| BioProject |
PRJNA715729 |
| SRA |
SRP311343 |
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