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| Status |
Public on Mar 19, 2021 |
| Title |
Bulk RNA seq of sorted C. elegans neurons |
| Organism |
Caenorhabditis elegans |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Bulk RNA seq of FACS isolated C. elegans neurons, with pan-neuronal reference, and sorted viable cell reference samples. Collected for comparison to single cell sequencing data
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| Overall design |
Cell type specific C. elegans neuronal samples were obtained via FACS for comparison to each other, and to pan-neuronal and all cell references. Sample names describe the cell type targeted (ASG, AVE, AWA, etc…), Rab3 indicates samples targeted with a Pan-Neuronal Marker for direct comparison to each individual cell type. Ref samples were obtained by dissociating and FACS isolation using only stains to sepatate living and dead cells and thus represents an "all cell" reference.
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| Contributor(s) |
Barrett A, McWhirter R, Taylor SR, Weinreb A, Miller III DM, Hammarlund M |
| Citation(s) |
33856427 |
| |
| Submission date |
Mar 18, 2021 |
| Last update date |
Jun 18, 2021 |
| Contact name |
Marc Hammarlund |
| E-mail(s) |
marc.hammarlund@yale.edu
|
| Organization name |
Yale University
|
| Department |
Genetics
|
| Lab |
Hammarlund
|
| Street address |
295 Congress Ave
|
| City |
New Haven |
| State/province |
Connecticut |
| ZIP/Postal code |
06510 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL18245 |
Illumina HiSeq 2500 (Caenorhabditis elegans) |
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| Samples (37)
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| Relations |
| BioProject |
PRJNA715371 |
| SRA |
SRP311166 |
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