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Series GSE168613 Query DataSets for GSE168613
Status Public on Nov 02, 2022
Title Inflammation of the Aged Bone Marrow Niche Drives Blood Aging
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Hematopoietic aging is defined by a loss of regenerative capacity and skewed differentiation from hematopoietic stem cells (HSC) leading to dysfunctional blood production. Signals from the bone marrow (BM) microenvironment dynamically tailor hematopoiesis, but the effect of aging on the niche and the contribution of the aging niche to blood aging still remains unclear. Here, we show the development of an inflammatory milieu in the aged marrow cavity, which drives both niche and hematopoietic system remodeling. We find decreased numbers and functionality of osteogenic endosteal mesenchymal stromal cells (MSC), expansion of pro-inflammatory perisinusoidal MSCs, and deterioration of the central marrow sinusoidal endothelium, which together create a self-reinforcing inflamed BM milieu. Single cell molecular mapping of old niche cells further confirms disruption of cell identities and enrichment of inflammatory response genes. Inflammation, in turn, drives chronic activation of emergency myelopoiesis pathways in old HSCs and multipotent progenitors, which promotes myeloid differentiation at the expense of lymphoid and erythroid commitment, and hinders hematopoietic regeneration. Remarkably, both defective hematopoietic regeneration, niche deterioration and HSC aging can be improved by blocking inflammatory IL-1 signaling. Our results indicate that targeting the pro-inflammatory niche milieu can be instrumental in restoring blood production during aging.
 
Overall design RNA sequencing of mesenchymal and endothelial populations isolated from both endosteum and central marrow of young and old mice
 
Contributor(s) Verovskaya EV, Mitchell CA, Calero-Nieto FJ, Hérault A, Dellorusso PV, Wang X, Zhang SY, Svendsen AF, Bakker S, Pietras EM, Ho TT, Göttgens B, Passegué E
Citation(s) 36650381
Submission date Mar 10, 2021
Last update date Feb 02, 2023
Contact name Bertie Gottgens
Organization name University of Cambridge
Department Haematology
Street address Hills Road
City Cambridge
ZIP/Postal code CB2 0XY
Country United Kingdom
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (661)
GSM5150653 RBG18697_Young_OPr_001
GSM5150654 RBG18698_Young_OPr_002
GSM5150655 RBG18700_Young_OPr_003
This SubSeries is part of SuperSeries:
GSE169162 Stromal niche inflammation mediated by IL-1 signaling is a targetable driver of hematopoietic aging
Relations
BioProject PRJNA713010
SRA SRP310082

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE168613_HTSeq_cnt.txt.gz 6.7 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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