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Series GSE168435 Query DataSets for GSE168435
Status Public on Apr 30, 2021
Title Bat3 regulates T cell terminal differentiation in an mTORC2-dependent manner
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Human leukocyte antigen B (HLA-B)-associated transcript 3 (Bat3), also called Bcl-2-associated athanogene 6 (BAG6), is a multifunctional adapter protein that was previously shown to bind to the cytoplasmic tail of the checkpoint inhibitor Tim-3 and inhibit its downstream signaling pathway. Using mouse genetic models, we now demonstrate that deficiency of Bat3 selectively in T cells elicits a profound exhaustion phenotype and dampens autoreactive T cell-mediated neuroinflammation. Mechanistically, Bat3 acts as a critical mTORC2 inhibitor to suppress Akt function. As a result, Bat3 deficiency leads to increased Akt activity, and FOXO1 phosphorylation, indirectly promoting Prdm1. Transcriptional analysis of myelin antigen-specific CNS-infiltrating Bat3 deficient CD4 T cells revealed upregulation of dysfunction-associated genes concomitant with downregulation of genes associated with T cell effector function. Genes upregulated in Bat3cko T cells were significantly enriched for Prdm1(BLIMP1) and exhaustion gene signatures suggesting the absence of Bat3 can trigger T cell dysfunction even under highly inflammatory autoimmune conditions. Taken together, in this paper we identify a novel mechanism by which Bat3 not only directly suppresses Tim-3 signaling, but also plays a critical role in controlling the mTORC2-Akt-Blimp-1 pathway thereby suppressing the induction of the co-inhibitory module and preventing terminal differentiation and dysfunction of T cells.
 
Overall design RNA-Seq comparision of Bat3cKO and Tim3cKO CNS-infiltrating Th1 cells from mice undergoing EAE.
 
Contributor(s) Zhu C, Dixon KO, Singer M, Kuchroo V
Citation(s) 33931442
Submission date Mar 08, 2021
Last update date May 19, 2021
Contact name Meromit Singer
E-mail(s) msinger@broadinstitute.org
Organization name Broad Institute of MIT and Harvard
Street address 415 main st, ROOM 6031
City CAMBRIDGE
State/province MASSACHUSETTS
ZIP/Postal code 02142
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (5)
GSM5139862 Bat3cko_rep1
GSM5139863 Bat3cko_rep2
GSM5139864 Tim3cko_rep1
Relations
BioProject PRJNA707416
SRA SRP309701

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Supplementary file Size Download File type/resource
GSE168435_TPM.quantile.log2.txt.gz 194.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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